Gene detail

Detailed information of EGACTEQ4350005111-PA in Actinia equina

Genomic Location: WHPX01001078.1:407217...416600
NR annotation: XP_031553016.1, zinc finger CCHC domain-containing protein 7-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350005111-PA

TGGCTGCGGAAGTTTTATTTTGATACTCCAAAAAATCCAATGTTTTTACTTGCTTGTTTGCTCAGTCATGTTTTTACATCGAAAACTATAATATTTAATTGATGTTTTAGGCTAAAGTCAACGTTCAAGGGAGAGTATGATAAGTGTCTAAAGATTGAAGAATTATGAGCGATGAGGAGTTTGATGAAGAAAGCTTCAGGGCCTATGAAAATGACCTTTATGGAGAAAAGTCCTCAGACAGCGAGGAAGAGATTGATAGTGAGATAGAAGAAGCCCTTTACAGTCAAGTGCATTATTCCTTCTCCTTGCCAAATGAAGAAGACTTGGATGACAAAgatgGAGGTGCTGATTCATGTCATGCTGGTAGTGAAGCATCATTTCTTGATTTCAAACAACAAGATGACAAGGAAGTGCAAGATGTTGTAAATGAGGATGAAGATTCAGTTAAGACAATAGATTATATTGTTATTGATGAAGAAAGTGGCAGTAGCAGTGGTAAaagcaatgatgataatgacaatcaGGAAGGCAattgtgatgatgacgattacCACAATGTTGAAGTCACTGGATCTACACAAGAAAACTGGAGTTTGATTAAAGAAGATCTAAAAaCAAATTTATTAGCTGATGGTAAACGACGACCAGTGTCAAGATActacaagaaagaaggaaatttCAGATGTCATAACTGTAATGAAAAGGGTCATAAGGCCACGGATTGTCCCACACCAAAGAAAATCAGTTGCTTTTTGTGTGGTGGTGAACACATCAGGAGACGATGTCCTAATGAATTGTGTTTCAACTGTCAAGAACCAGGACACCGTGTGATGAATTGTAAGCAGCCCCGAAGTCGGCCAGATGACCAGTGTCGTAGATGTTACATGTTTGGACACCATTCCAAGGATTGTCCTGATCGCTGGAGACAGTATCATCGCACAATAGATTCAAAGAAACTGCCAGTTGTGAATAGGACAGGGGAGTTCAATGGACCAGTATATTGCTATAACTGCTCTGAAGAAGGACACTATGGACACGAATGCATACACGATCGGATGGACAATTACTTAAATCCAATCTACCCGTTTGTTGTAAAATATGATGGCGGCCCAGAAGACCATCAAGACAATCGCATTTCACAAGATAAATGCAGAAAGCGAACCAAAACTCACGATGGAACAGTCGGCAATTTTCGTGAAGAAATCAGCGAGAGATCTAAAAAACGAAGAGGAAACAAAGAAAGACGGTCGTGGCCAAAGCAGAGCCATGATCGCAAAGAAAGCAGGAGGATAGAGGAAATCGAAGAAGGAATTGATTATAGTGGGGTAACTACCATACGCGATGGAAGAGGCGGGGAGTTCATTGAACGAATAAGTGAAAGAACCAAAAAACGACGACAGAGAGGTAAAGATAAAAGGCATTCCTGGTCAGGCCAGAGGCATGATCAAGAACAAAACAGTAGAACGCAAGGAATTGAGGAAGACATGACCATTAGAATACAGAGCTCGATACCGCACCATCAAGAAGGATCAACTCCTCGACATTTTGAGAATGCTAACAAAGTGAAAATAGGGTCCAAGAGAAGACACAGTGGGACGCCAACGCAGTATGATAATGAATCAAAGAAAGGAAAGCAGGCTGagcacaaaataaataaacaaaagaggaaaaagagaaaagaaaaagatactCAGTTTACATCCCACAATGAGCGCATTGTTGAACTTGTTCACGATGATGAAGTATACGGCAATGAATATCAGACCAGTcaccgaaaaaagacaaaaagcaAGtttaacaAGCAAAAAGAACCGCTACCCGACGCTTTCACAAGAATGGTTGAAGACTGGGAAGAGATGAATACATCTCAGCACTCGTCTCCAGCCTACAGCCGTCCTCAATCGCAAGGTTCATCACGTCGCCAGAACAAAAAGTTCAAAGAGGATAAGCGTTCGTCACAAGAATACAACAGGAAACCTTACAACAGTTCACGAGGTTTTCGATCTAAATGGAAGTGAATAAACACCGTATtgtatacacttgattgcagaatgATTGTAGT

Protein

Uniprot

Uniprot term	Description
Q2KIN0	Zinc finger CCHC domain-containing protein 7 OS=Bos taurus OX=9913 GN=ZCCHC7 PE=2 SV=2
B1AX39	Zinc finger CCHC domain-containing protein 7 OS=Mus musculus OX=10090 GN=Zcchc7 PE=2 SV=1
B1WC15	Zinc finger CCHC domain-containing protein 7 OS=Rattus norvegicus OX=10116 GN=Zcchc7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR051644	Family	TRAMP complex component and AT-rich DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46543	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0031499	Cellular Component	TRAMP complex	Interproscan
GO:0043629	Biological Process	obsolete ncRNA polyadenylation	Interproscan
GO:0071031	Biological Process	nuclear mRNA surveillance of mRNA 3'-end processing	Interproscan
GO:0071035	Biological Process	nuclear polyadenylation-dependent rRNA catabolic process	Interproscan
GO:0071036	Biological Process	nuclear polyadenylation-dependent snoRNA catabolic process	Interproscan
GO:0071037	Biological Process	nuclear polyadenylation-dependent snRNA catabolic process	Interproscan
GO:0071038	Biological Process	TRAMP-dependent tRNA surveillance pathway	Interproscan
GO:0071039	Biological Process	nuclear polyadenylation-dependent CUT catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12597	AIR1_2; protein AIR1/2	-	Transfer RNA biogenesis	ko03016	deepkoala