Gene detail

Detailed information of EGACTEQ4350005477-PA in Actinia equina

Genomic Location: WHPX01000682.1:579970...705141
NR annotation: XP_031570680.1, BRCA1-associated protein-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350005477-PA

ATGTCTATCTCTCTAGTCGTACTAAGACTAGAGCTGGCTGATGAATACGATTGTCCAGATGACTTCGAGTTCTGTGAGGAGGAACCTAAGACCAACAAATCAGAGACCTTTAATCCTAAAGACATAAAACTAAACCAAGGACAAAGAGAACTAGGAGAACTGACTATAGAAACCCTTAAAAGAGAGCAAAAAGATATACCATCTTTGGAATCAGAAGACAAAGAGGATACTGAGATTGGAATAACCAAAGCAGATGAAACATCCCAGTGGATGGGGAGGATTGGGTTCTTCTCTGGCAATCCAACGGTAGAGACCGTCAAAGGAATTCTCCATATCTATAAAAACAATGAGATGACGTCGCTCACCAAAGGAATTTCCAGAAGTCAGACCATCTGCATGCTTGCAGTCCCAGCAAAGCTTGCATGTATTGACCTTTTACAGTTCGTGGCTCCCTCAGAaGAGTTCATTCAACACATTAAGATTATCAGAGACGCCACACCAAACCAGTACATGGCTTTAATCAAGTTTAAAAACCAGgaatTAGCGGATGAATTTTACAACACTTACAATGGCCACCAATACAATTCACTTGAAGAAGAGGTCTGCCATCTTGTCTATGTAGCAAAAGTAGAAGTCTTGAAATCTTCACAGGGAGCAAGTTTACCGTGTTCTGGTCTTACAGAATTGCCAAAGTGTCCAGTTTGCTTGGAACGAATGGATGAATCAGTTGAAGGAGTTCTTACAATCCTCTGTAACCACTCATTTCATGGGAGCTGTTTATCCAAGTGGTCAGACACAAGCTGCCCAGTTTGTAGATATGTCCAAACCCCTGAACCAACCAGTGAGAACAGGTGCTTGACGTGTGATTCAACAGAGAACTTGTGGATTTGCTTGATATGTGGTCACGTGGGATGTGGACGTTATGCTGGTTGCCATGCGTACAGgcATTATGAGAAAACTCAACACACGTACTCGTTAGAGCTGGGAACGCAGCGTGTTTGGGATTATACTGGAGACAATTATGTTCATCGGTTAATCCAAAACAAGACAGACGGTAAGCTAGTGGAGTATGGGCCCACGCAAGGTCAGCCAGGAGAACTGGAAGCAAAATATAATGGATTACTAGAAAAAAAATGGACTTCAGTTATAAGACTACAAAAAAAAGTTATGGACCTTGAGTCCAGGTTGTCTGAGGCAGAAAAGGAAGTGCAAACAGGTGGTGGACCAAGTAAAAATAGATCTCCTGAAGATTGGATACCTAGGCCGCCAGAAAGATATTCCTTGTCAAGTCATAGAAGTCCTATTACCAAGGTCCTATTTCATCCAGTTTATAGTGTTATGGTAACATCGTCGGAAGATGCCACTGTCAAGGTTTGGGATTACGAAACAGCTTCATGTTCTGCAGATATGACTATAAAGCTATGGGATTTTCAAGGATATGAATGTGTGAAAACATTGCATGGTCATGATCACAACGTATCTTCCATATCATTTATGCCATCTGGAGACTTCTTAGTGTCGTCGTCTCGAGACAAAAGCATTAAAATGTGGGAAATAGCTACTGGGTATTGTGTGAAGACCTTTCTTGGTCATAGGGAATGGGTGAGACGGGTCAAACCAAATGCCGATGGTTCTCTTTTAGCAAGTTGTTCCAATGACCAGACTATAAGAATTTGGGTCGttgcaaacaaagaatgcaAGTTTGACTTTCATGATCACGAGCATGTGATTGAAGACATCAATTGGGCACCAGAGACTGCACACCATGTAGTCAACGAAGCTGCAGGAATGGAGGGAGGCAAAAAAGGTGGCAGTCCTGGTCCTTTCTTAGTATCAGGATCTAGAGACAAGTCAATCAAGATATGGGATGTTAGCTCAGGTGTCTGTCTCCTAACTTTGgTTGGACATGATAATTGGGTACGAGGCGTAATGTTCCATCCAGGAGGAAAGTACATAATTAGCTGTTCTGATGATAAAACACTTAGGATTTGGGATTATAAAAACAAGAGATGTGCAAAAACGCTGCTGGCTCATGACCATTTTGTGACTTGTATAGATTTCCACAAGTCTGCTCCGTTCGTCATCACTGGTAGTGTAGATATGACAGCCAAAGTATGGGAATGCCGCTAA

Transcript

EGACTEQ4350005477-PA

Protein

Uniprot

Gene family

Uniprot term	Description
Q7Z569	BRCA1-associated protein OS=Homo sapiens OX=9606 GN=BRAP PE=1 SV=2
Q99MP8	BRCA1-associated protein OS=Mus musculus OX=10090 GN=Brap PE=1 SV=1
Q95QN6	BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans OX=6239 GN=brap-2 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07576	BRAP2	BRCA1-associated protein 2	Family	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011422	Domain	BRCA1-associated 2/ETP1, RRM	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR047243	Domain	BRCA1-associated protein, RING finger, H2 subclass	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037190	Homologous_superfamily	LIS1, N-terminal	Interproscan
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017252	Family	Dynein regulator LIS1	Interproscan
IPR034932	Domain	BRAP2, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24007	BRCA1-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan