Gene detail

Detailed information of EGACTEQ4350006616-PA in Actinia equina

Genomic Location: WHPX01000021.1:32304...34451
NR annotation: XP_031561519.1, E3 ubiquitin-protein ligase TRIM71-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350006616-PA

ATGGAATCTTTCCTTGTCGATCTGAAGAAGCACGTGGAGTGTTCCTTGTGTAATGATAGATTCACTGAACCGAAGGTTCTTTCATGCTTCCATACATTTTGTAAGCCTTGTATCAAAAGACACGCCGAGCTGATCGAGGAAGTCGACGTCTTCAAGTGTCCTCGATGTAAATCACAAACTCCTCTACCAGAACCAAGCAGCGTGGAAGATTTACAGCCAAGCTCACTGCATTCAAGAATCTTGAAGGGTCTTGCATTGGTAGAAGGAGAAAAGGTTTGTTCTGTTTCTGAGAGACATTCCTCAGcttcttggtattgttttgacTGTGATCGCTCGATGTGTGAAGAATGCGAGAAGAACCATTCAGAGTTTATCAAATATCACAAGGTCGTTTTTCTGGCTGATTTGAAGGAAGAAGATATGGAGTTCataataacaagagaaaatcctTGTAAAAGTCACCCGCATCACAGGCTAGAGTCATTCTGTGAAGACTGTGATGACATGATTTGTTTAGCATGTTGGAAACACAATCACAAGGATCATAAGTCAATATCATTAGATAAGTTTGCTTCGATTAAGAAAGCTGTATTGTCAAAGCATCTGCAGGTACTAGAGCAGTTGAGATTAGATGACAAGGAAAAGCAACAAGAAAACATTGCcaaaacaatcaaacaacaaGGAGAAAAGGCCAAAGAAGTTGTAAAAGACACAACTAATAAAATGATCCAGATGCtacaaggaaaggaaaggaaactgCTTAGACAAATTGATAAGGAGTTAGATGCAAGCACAAGAAATTTGAATATAATTCGACATATTCCAGCAGTCAAGGAATACATAAAAAATGTGATGGAAAAAGGACTGGCAAGTGAAATGATCAACATTCAAGAGACACAATGTTTGGAGAAATTCATCTTCAACCCAATTCCACTGTCATCAAGAATTGTCTTTATTCCTAACAAAGAGCTGGGGCAACAAATAGAAACAGGCCTTGGAGAAATACAGACGCATTCTGAAACTGACCATACAATGAGCACTATTCAGATGGAGGGTGAGCCAGAACCTGCAAGACAACAAAGGCTTATATTGATAACTAAAACCTCGACAGGACAGGATAGTATTAATACAGGCGATGTCGTAGACATCCAAATCAGCCCTGAAGATCACGTGGAAATAGAGGAGAAAGATGTGAGGACTGCTGGGAGAATAGAAGTTGAATTCATGGCTAAAGTAGCTGGTCAGCtgacagcagaggttcaagtgaatgggaatcatgtatctaacagtccactaATGATGAATGTGATGCCTCAACAGATGAGAGTTACAGGACCGTTTAACATGAAAGGTGTGGATATTGACTCTCTGAGTTTGTCAGGTATAGcagtaaacaaaaacaatagcagAATTGCTGTCGCTTCCGTTTCTTCTTCCTGTGTGCATGTCTTCACCACTAATGGAGATCCCTTACTGACATATTATGGTAGCCAAGTTAGTGCACAGGGACAGTTGACTCTCCCTGAAGGTTTGGCATTTCTGGATGATGAAAGTTTAGTCATAactgactttcgtaaccatagAATATGTAAAGTGAACACTACAGTAGGGACATTGATTAAGACATTTGGTAACCATGGTCACAGTAATAAACAGTTCAATCAACCCTGTGGAGTACATATTGATGAAGATGGTAACATCTTTGTGTGTGATCGTATTAATCAACGTGTTCAAGTCTTCACAAGAGACGgtgactatcaatatcagtttggtttgacAACACAAGACGACTTTGATCCAGTTGATGTGGTAACACATAGTGGACTATTTTACGTcagtgattataataataacatcatTCATGTGTTTGAGAAGAGAGGTACTGTACCGACTAGAATATCGACGATTGGTGGGTTCGGCAGTGCTGATGGTCAGCTGAGTGAACCATTGGGACTGGCTATTGATAATAACAATTATTTGTTGGTTTGTGATCGTAAGAACAATCGTGTTCAGAAATTTACCCTCCATGGTCATTTCGTATGCAAGACATTGGATGAAATCAAGGATCCTGTATATATAACTGTTTTGAATGATGGTCAGATATTGGTTACTTCTTATGCAAATGGTATGGTGTTCTGTTTAAGGTAG

Transcript

EGACTEQ4350006616-PA

Protein

Uniprot

Uniprot term	Description
Q03601	RING finger protein nhl-1 OS=Caenorhabditis elegans OX=6239 GN=nhl-1 PE=1 SV=2
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan