Genomic Location: WHPX01001085.1:1124600...1133006
NR annotation: XP_031568802.1, mitochondrial Rho GTPase 1-A-like [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350007302-PD in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6NVC5 | Mitochondrial Rho GTPase 1-A OS=Danio rerio OX=7955 GN=rhot1a PE=2 SV=1 |
| Q8IXI2 | Mitochondrial Rho GTPase 1 OS=Homo sapiens OX=9606 GN=RHOT1 PE=1 SV=2 |
| Q2HJF8 | Mitochondrial Rho GTPase 1 OS=Bos taurus OX=9913 GN=RHOT1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003999 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00071 all species → | Ras | Ras family | Domain | Interproscan |
| PF08355 all species → | EF_assoc_1 | EF hand associated | Family | Interproscan |
| PF08356 all species → | EF_assoc_2 | EF hand associated | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR001806 all species → | Family | Small GTPase | Interproscan |
| IPR013566 all species → | Domain | Mitochondrial Rho GTPase 1/3, EF hand associated, type-1 | Interproscan |
| IPR003578 all species → | Family | Small GTPase Rho | Interproscan |
| IPR005225 all species → | Domain | Small GTP-binding protein domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR013567 all species → | Domain | EF hand associated, type-2 | Interproscan |
| IPR020860 all species → | Domain | MIRO domain | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24072 all species → | RHO FAMILY GTPASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005741 all species → | Cellular Component | mitochondrial outer membrane | Interproscan |
| GO:0007005 all species → | Biological Process | mitochondrion organization | Interproscan |
| GO:0007264 all species → | Biological Process | small GTPase-mediated signal transduction | Interproscan |
| GO:0031307 all species → | Cellular Component | obsolete integral component of mitochondrial outer membrane | Interproscan |
| GO:0047497 all species → | Biological Process | mitochondrion transport along microtubule | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
EGACTEQ4350007302-PD.Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
