Gene detail

Detailed information of EGACTEQ4350007541-PA in Actinia equina

Genomic Location: WHPX01000811.1:42035...44626
NR annotation: XP_031552019.1, tetratricopeptide repeat protein 28-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350007541-PA

ATGGCCGCAGCACAAGAGTATTCCACAGAAGAACTTAACTACTTCAGGGTTTGCAATATCACCACTCGAATCATTGCTGACGGACTACGAGTAGTCTTCAAACAATTATGGGACACTCATTACCAGGCGACACACGGCCAGTGGCAAGATACGGCTAAGAATGGCATTGATTTGTACAGCATGGAATCTTCTAAAAGTCATAGTATTGGCAAGGGTCTCGATCCCGTTGTTAAGAAATGCGTGGATGATTTACGTCAGTTCCGTAATAAAGTCTTTGCTCATGTGTCTGATGGAAAGCTAAAAGAAAGGGATTTTCAAACCTCTATGCAAACGGTAATAGATGATTTTATCGCCCTAAAACTAGACACTGCTGGTATAGAGGCAATCAAAAACCAGAAAACATTTCCTACAGAGGAACTACGTCTTACTCAGAAGCAGttagaaaaggagaaaatacGTAACGAGGAACCACGATCGTTTTGTGTTTTGCCACCCAAACCATCCCACGAAGTTATCGATCGTTCAAGCGAAATGAATGAGATAATacaaaagatgaaaaagttGAGAAGtacaaaaagaaatgaaataactgTTGTTTATCTGTCTGGGAATCCTGGCTGTGGCAAAAGTGAAATAGCAAGGCAGATAGGTGAGAGGGTTTTCGATGATGTTCCTGATAACGCGACAGATCAAGTAAAGTTTGTGTTCGCCCTAAATGCatccagtacagacacattaATACAATCATATATTGAATTTGCAATTACTTTAAACTGTGATGAGAAATCTACTACGAGCATTGGAACATCAAAAGATCTTTCTCCGGAAGACAAACTTATTCATCTTAAAACTCTTGTAGCTCCCAAACTGCGAAAGTATTCTTCATGGCTCTTGATTGTGGATAACGTCACAGACGTTAAATCAGTCTTCAGATTCTTGCCACAAGCGGGAGAGAAGACGGAGGGCAATGGTCAGATACTTTTTACCACACAAGACAGTCGATCCATTGGTGCCAATAATTCGCACACTTACCATTTATCCCTTTGTCGCGGTATGAAATCTGATGAAGCGGTAAAAACACTTTCTGAAATATCGGGCGTTGCTTCAAATAAAGAATGCATTTTACAAATTGCGAAGGCTCTAGATTTCCAGCCACTAGCACTAGCGTGTGCAGCAACTTACATGAAGCGTGTAAGTGATGTAACGTCAATGTCATGGGAAGAATATTTACAGAAGATTCAACAAGGCAAGCGAGAAGCGACTGAAGGGGAATACAAAACAATTAGCGTAACTTACTCGCAACCGATGACTGCAGCAGTCAAGTTGGCCTTAGAAAAAGAAATGTCAGCAGACATGGTTATGATGCATGCTTTTCAGTTCTTGTCTGCGTTGGGCCCTGAGCGGATACCCTTGGAATATGTCGTACAATATGTAACACGGTGCATGACAGATCAAGACGAAGATCTCGTGGCCGCCACTGTCTTTTCATCTTCACTTATTCTTAATGTTTCCGAAAACCAGTCAAAAGAGATTGGTATACATCAAGTTGTACATAGCTGTCTACAAGATATTGTTCTACATAAGAGCAAAAAAGAAGATTTTTATTTCTTGaaaacgaaTTTTGAACAAGAATACTACGACTACGTCCGTTGCTTCAATGCCGCGGGAAACGTCTGCAAAACCCACGCTATGCACGAAGCtgcgaaaacattttttgaaacagtACTAATGATAAAGGAATTATATCATGgtaatcatccaacacttgctactacattgagcaatctaggatcgaacctccgtcaactgggcaagcatgaagaagcgcacAAATATCTCGAGAGAGCAATGACTATtaaagagatggcgtatgatcaaaatcatccaacacttgctactacattgagtaatctaggatcgaacctccgtcatctgggcaagcatgaagaagcaaagaaatgtctcgagaaagcattgaccattgaagagatggcgtatgatcaaaatcatccaacccttgctattacattgaataatctaggatcgaacctccatAATGTgtgcaagcatgaagaagcacagaaatgtctcgagagagcattgactattcaagagatgacgtatgatcaaaatcacccaacacttgctactacattgaataatctaggatcgaacctccgtcatctgggcaagcaataa

Transcript

EGACTEQ4350007541-PA

GCtgtttgatgtttttaatgtaTGTATACAGTTATAATATTTACGAGGAAAATACAAAGTAgtgatttttaaaagaaattcgtaTTGTCCTTGGTTGAGTCGTACTTAATTATTTGTTGACTGGGATTGTATTGTTATTGCAGATGGCCGCAGCACAAGAGTATTCCACAGAAGAACTTAACTACTTCAGGGTTTGCAATATCACCACTCGAATCATTGCTGACGGACTACGAGTAGTCTTCAAACAATTATGGGACACTCATTACCAGGCGACACACGGCCAGTGGCAAGATACGGCTAAGAATGGCATTGATTTGTACAGCATGGAATCTTCTAAAAGTCATAGTATTGGCAAGGGTCTCGATCCCGTTGTTAAGAAATGCGTGGATGATTTACGTCAGTTCCGTAATAAAGTCTTTGCTCATGTGTCTGATGGAAAGCTAAAAGAAAGGGATTTTCAAACCTCTATGCAAACGGTAATAGATGATTTTATCGCCCTAAAACTAGACACTGCTGGTATAGAGGCAATCAAAAACCAGAAAACATTTCCTACAGAGGAACTACGTCTTACTCAGAAGCAGttagaaaaggagaaaatacGTAACGAGGAACCACGATCGTTTTGTGTTTTGCCACCCAAACCATCCCACGAAGTTATCGATCGTTCAAGCGAAATGAATGAGATAATacaaaagatgaaaaagttGAGAAGtacaaaaagaaatgaaataactgTTGTTTATCTGTCTGGGAATCCTGGCTGTGGCAAAAGTGAAATAGCAAGGCAGATAGGTGAGAGGGTTTTCGATGATGTTCCTGATAACGCGACAGATCAAGTAAAGTTTGTGTTCGCCCTAAATGCatccagtacagacacattaATACAATCATATATTGAATTTGCAATTACTTTAAACTGTGATGAGAAATCTACTACGAGCATTGGAACATCAAAAGATCTTTCTCCGGAAGACAAACTTATTCATCTTAAAACTCTTGTAGCTCCCAAACTGCGAAAGTATTCTTCATGGCTCTTGATTGTGGATAACGTCACAGACGTTAAATCAGTCTTCAGATTCTTGCCACAAGCGGGAGAGAAGACGGAGGGCAATGGTCAGATACTTTTTACCACACAAGACAGTCGATCCATTGGTGCCAATAATTCGCACACTTACCATTTATCCCTTTGTCGCGGTATGAAATCTGATGAAGCGGTAAAAACACTTTCTGAAATATCGGGCGTTGCTTCAAATAAAGAATGCATTTTACAAATTGCGAAGGCTCTAGATTTCCAGCCACTAGCACTAGCGTGTGCAGCAACTTACATGAAGCGTGTAAGTGATGTAACGTCAATGTCATGGGAAGAATATTTACAGAAGATTCAACAAGGCAAGCGAGAAGCGACTGAAGGGGAATACAAAACAATTAGCGTAACTTACTCGCAACCGATGACTGCAGCAGTCAAGTTGGCCTTAGAAAAAGAAATGTCAGCAGACATGGTTATGATGCATGCTTTTCAGTTCTTGTCTGCGTTGGGCCCTGAGCGGATACCCTTGGAATATGTCGTACAATATGTAACACGGTGCATGACAGATCAAGACGAAGATCTCGTGGCCGCCACTGTCTTTTCATCTTCACTTATTCTTAATGTTTCCGAAAACCAGTCAAAAGAGATTGGTATACATCAAGTTGTACATAGCTGTCTACAAGATATTGTTCTACATAAGAGCAAAAAAGAAGATTTTTATTTCTTGaaaacgaaTTTTGAACAAGAATACTACGACTACGTCCGTTGCTTCAATGCCGCGGGAAACGTCTGCAAAACCCACGCTATGCACGAAGCtgcgaaaacattttttgaaacagtACTAATGATAAAGGAATTATATCATGgtaatcatccaacacttgctactacattgagcaatctaggatcgaacctccgtcaactgggcaagcatgaagaagcgcacAAATATCTCGAGAGAGCAATGACTATtaaagagatggcgtatgatcaaaatcatccaacacttgctactacattgagtaatctaggatcgaacctccgtcatctgggcaagcatgaagaagcaaagaaatgtctcgagaaagcattgaccattgaagagatggcgtatgatcaaaatcatccaacccttgctattacattgaataatctaggatcgaacctccatAATGTgtgcaagcatgaagaagcacagaaatgtctcgagagagcattgactattcaagagatgacgtatgatcaaaatcacccaacacttgctactacattgaataatctaggatcgaacctccgtcatctgggcaagcaataa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF00931	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002182	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043531	Molecular Function	ADP binding	Interproscan