Genomic Location: WHPX01000511.1:857577...864375
NR annotation: XP_031571998.1, lamin-A-like isoform X3 [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350007676-PC in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P11048 | Lamin-A OS=Xenopus laevis OX=8355 GN=lmna PE=2 SV=1 |
| Q3ZD69 | Prelamin-A/C OS=Sus scrofa OX=9823 GN=LMNA PE=3 SV=1 |
| P09010 | Lamin-B1.S OS=Xenopus laevis OX=8355 GN=lmnb1.S PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003420 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00038 all species → | Filament | Intermediate filament protein | Coiled-coil | Interproscan |
| PF00932 all species → | LTD | Lamin Tail Domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001322 all species → | Domain | Lamin tail domain | Interproscan |
| IPR036415 all species → | Homologous_superfamily | Lamin tail domain superfamily | Interproscan |
| IPR039008 all species → | Domain | Intermediate filament, rod domain | Interproscan |
| IPR018039 all species → | Conserved_site | Intermediate filament protein, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45721 all species → | LAMIN DM0-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005200 all species → | Molecular Function | structural constituent of cytoskeleton | Interproscan |
| GO:0005635 all species → | Cellular Component | nuclear envelope | Interproscan |
| GO:0005652 all species → | Cellular Component | nuclear lamina | Interproscan |
| GO:0006998 all species → | Biological Process | nuclear envelope organization | Interproscan |
| GO:0007097 all species → | Biological Process | nuclear migration | Interproscan |
| GO:0031507 all species → | Biological Process | heterochromatin formation | Interproscan |
| GO:0051664 all species → | Biological Process | nuclear pore localization | Interproscan |
| GO:0090435 all species → | Biological Process | protein localization to nuclear envelope | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12641 | LMNA; lamin A/C | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
