Gene detail

Detailed information of EGACTEQ4350009153-PA in Actinia equina

Genomic Location: WHPX01000053.1:285461...303373
NR annotation: XP_031573494.1, fidgetin-like protein 1 isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350009153-PA

atggcgtttcGTGTGGCTCTTCGCAGAATTGGTGCTAATATAGAACAGCTTGGTATTCGTCATGTTAGTGATAACCTCTATAACAACACTAGAAGTCATCTCATGATTAACAAGGACACAAGAGTCATCTGCCAGGGATTCACAGGAAAGCAGGGTACTTTTCACAGCCAGCAGTCAATTGAGTATGGTACTAACATGGTTGGTGGTGTGTCTCCTGGTAAAGGTGGAAACACTcatcttgggcttcctgtattcAATACTGTTAAAGAGGCCAAAGAAGAGACAGGAGCTGATGCTTCAGTAATATACGTCCCACCTCCATTTGCCGCTGATGCTATACATGAAGCTATTGAAGCTGAAATTGGTCTTATAGTGTGCATTACAGAAGGGATACCACAACAAGATATGGTCAAGATAAAGCATCGGCTTGTTAGACAAGGCAAGACACGTATGATTGGCCCTAACTGTCCTGGAATCATTAAGCCTGGTGCCTGTAAAATCGGTATCATGCCAGGGCATATCCATCAACCAGGAATTATTGGTATTGTGTCCAGGTCAGGTACTTTGACATATGAAGCTGTACATCAAACAACACTAACTGGACTTGGCCAGACACTTTGTGTAGGAATTGGAGGAGATCCATTCAACGGAACAAATTTTGTAGATTGCCTGGAGGTGTTCCTGAATGACCCTGAAACAAAAGGTATTATTCTTATTGGTGAAATTGGAGGTGGAGCAGAAGAGAGAGCTGCCGAATACCTACTAGAACACAACCAGGGTGATAATGCTAAGCCAGTTGTGTCATTTATTGCTGGTATTACTGCACCTCCCGGAAGAAGAATGGGACATGCAGGAGCTATTATTGCTGGAGGCCGAGGAGGAGCTGAACACAAAATTCAATCTTTGAAAGATGCTGGTGTCGAAGTGACAATGTCACCTGCACAGATGGGATCAACCATGAAAAAGCTTTACCAAGAACACTTGAATAAAGAAAATGGTGTTGTATCCAGGGAAGGCTACTCTCGACTATCCCGACAATATGCTGACAAGTATTGTGGCATTGTTGATGGCCAGGATACGAATTCCGGTTTAAATAATTTTGCAGAACCTGTGTTGGCGCTAGTAACAGGACACAGAAATGATAGTCCAAATTGGGAGTCATCCCTTACACTAGATGCTTTTAAAAACAGTAAAGAATTGGAACTTTCTAAAAATACACAAAATCAAAGCCCTCACTTTTCTGAAGATTCTATGGTTACAGAAGTATCTTCCTCAGACAATTCTTGGAAGGACAACCTTACGAACCAAAGGAACTCAAAACTTGATCCTAATGCAGAAACCAGCAAACAAAATCCTCCTGCCATTATAGAAAAAACAAGCCATGATACAGAGGAAAACATTACTTCATCTAATAAGAGAAAATGGAATTTTGTTTATTCAAATGAAGACAGTACTACGACAAGGCAGCCCTTACATGGCAACATAGCTGGCACTAAATCTACACTCAGTGGCCAGTCACAAGGTCCCAACCCTTCTTATAACAAGGCATTTCCCTCTAAGGATAATGCCAATACCAGTATGCAGCCTATTAAAGAGCAGGGCCAAAATAGATTTACCAGGAAGGATGATGTTGAGGATTTCCAGGAACAGTCAAAACCATCAAAATTTATTACTGCAAAACACAAATATATAATTGATTGCAAGACGAAAAACCAGAGAGGAGGGGGGCATCAAGCAAATAGAGGAGTTGGTGATGACAGACAGAAAACAAGCAGTGGTAATGGTTATGGAGCTTTGTCAAGAAGAGCACTTGGAACAAGACGTGGCCCAAGTAGCAAGTTTGTACCTCCAATACCCCGAAACAATAGTGACGATGAAGTGATGGAAAATACTAGTATGACCAGGAAAAGAGGTTTTGATAAGAACAGTGGAGACATGGATGATGGAATGGAACCAGAAATAGATGAAAGACTGAAAAATATAGAGCCGAAGATGGTAGAGCTTATAATGAATGAGATAATGGACCATGGACCTCCCATCACATGGGATGATATTGCTGGACTGGAGTTTGCCAAGAATGTCATCAAGGAGATTGTAGTCTGGCCTATGCTTAGACCGGATATTTTCAAGGGACTGAGGGGACCCCCCAAGGGATTGCTGTTGTTTGGTCCCCCAGGGACTGGAAAGACATTGATTGGTAAATGCATAGCCAGCCAGTCTAAAGCCACTTTCTTTAGCATCAGTGCATCCTCTCTGACTTCAAAGTGGGTTGGTGAAGGAGAGAAGATGGTACGAGCATTATTTGCAGTAGCAAGATGCCATCTACCAGCAGTGATCTTCATAGATGAGATTGACTCACTATTAACCCAAAGAAGTGATGGCGAACACGAAGCATCAAGAAGAATCAAAACTGAATTCCTCGTACAATTGGATGGCGCAACAACAAATACAGATGAGAGGCTGTTAGTTGTGGGTGCAACAAATAGACCTCAAGAGATAGATGAAGCAGCTCGCAGACGGCTTGTTAAACGGCTTTACATTCCACTTCCTGACGGCGGCGCTCGTCACCAGATCATCCAAAACCTGTTATCACAGCAAAATTACAGCCTGACGGAACAGGATATTTCTAAGATTGTTACTCGCACAGAAGGTTATTCTGGTTCTGACATGAGTAACCTATGCAGAGAGGCTGCTATTGGTCCAATTCGTTGCATAGCAACATCAGACATTGAACACATTACTGCTGACCAGGTTCGTCCAATAGAATACACAGATTTTGATGCCGCGCTAAGCCAAGTACGAGCAAGCGTCTCACGGAAAGATCTAGACACCTACATCCAATGGAATACCTTatatggtagtggtagtaagtgA

Transcript

EGACTEQ4350009153-PA

Protein

Uniprot

Uniprot term	Description
O19069	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa OX=9823 GN=SUCLG1 PE=1 SV=2
Q58DR8	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Bos taurus OX=9913 GN=SUCLG1 PE=2 SV=3
P53597	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR003781	Domain	CoA-binding	Interproscan
IPR047858	Domain	Fidgetin-like 1, ATPase domain	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR005810	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11117	SUCCINYL-COA LIGASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0004776	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0009361	Cellular Component	succinate-CoA ligase complex (ADP-forming)	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26051	SPATA5L1; ribosome biogenesis protein SPATA5L1	EC:3.6.4.10	Ribosome biogenesis	ko03009	deepkoala