Detailed information of EGACTEQ4350009203-PA in Actinia equina

Genomic Location: WHPX01000969.1:413907...416004
NR annotation: XP_031572878.1, pre-rRNA-processing protein ESF2-like [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O74362Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=esf2 PE=1 SV=1
Q59YL9Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=ESF2 PE=3 SV=2
Q6FWS2Pre-rRNA-processing protein ESF2 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ESF2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006050 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039119
all species →		FamilyABT1/Esf2Interproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR034353
all species →		DomainABT1/ESF2, RNA recognition motifInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12311
all species →		ACTIVATOR OF BASAL TRANSCRIPTION 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000447
all species →		Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472
all species →		Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480
all species →		Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0034462
all species →		Biological Processsmall-subunit processome assemblyInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14785ESF2, ABT1; ESF2/ABP1 family protein-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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