Genomic Location: WHPX01000962.1:348821...376874
NR annotation: XP_031555629.1, transcription factor COE2-like [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350010583-PC in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O73742 | Transcription factor COE3 OS=Xenopus laevis OX=8355 GN=coe3 PE=2 SV=2 |
| O08791 | Transcription factor COE3 OS=Mus musculus OX=10090 GN=Ebf3 PE=1 SV=1 |
| Q9H4W6 | Transcription factor COE3 OS=Homo sapiens OX=9606 GN=EBF3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006192 (this species only) · gene tree & orthology |
| Transcription factor family | COE · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01833 all species → | TIG | IPT/TIG domain | Domain | Interproscan |
| PF13418 all species → | Kelch_4 | Galactose oxidase, central domain | Repeat | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| PF16423 all species → | COE1_HLH | Transcription factor COE1 helix-loop-helix domain | Domain | Interproscan |
| PF13854 all species → | Kelch_5 | Kelch motif | Repeat | Interproscan |
| PF16422 all species → | COE1_DBD | Transcription factor COE1 DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002909 all species → | Domain | IPT domain | Interproscan |
| IPR032200 all species → | Domain | Transcription factor COE, DNA-binding domain | Interproscan |
| IPR015915 all species → | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR003523 all species → | Family | Transcription factor COE | Interproscan |
| IPR038173 all species → | Homologous_superfamily | Transcription factor COE, DNA-binding domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR032201 all species → | Domain | Transcription factor COE, helix-loop-helix domain | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR018350 all species → | Conserved_site | Transcription factor COE, conserved site | Interproscan |
| IPR006652 all species → | Repeat | Kelch repeat type 1 | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10747 all species → | TRANSCRIPTION FACTOR COE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
EGACTEQ4350010583-PC.Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
