Gene detail

Detailed information of EGACTEQ4350011936-PA in Actinia equina

Genomic Location: WHPX01000443.1:900715...913367
NR annotation: XP_031566101.1, symplekin-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350011936-PA

ATGAACCTGCTGAAACATCCAAGTTCAGTTGAATTTCTTCCTCAAATAACAACGCTATTGACAGACCTCGGAGCATCACAGAATGAGCTACAAAAGAACATGCCAAAACCAACTCCAGAATCTTTAAAAAGAAGAGCCGAAAATGAAAATGCTGCAGCCAacaagaagtccaagctgctgGATatGGATGATCCTGATATTATCTCCATGACAACGGCAGAGGCGATTGACTTGACAGCACAAGACTTAATACCCCTCTTAGACAAAGACAATGTTACCAACCTTGTACTTATCAGTATGTTATCGCTACCGGACAACCTGCCGACAAACTTTAGTGATACCTACACACCTATTGCCGCAGCTGGGGGACAGGCTCAAGTTGCTCATTTAGCCCGGCTTTTGGCTTCGCAGATGACAGGAGTAGGGGTTGGTGTTGGGTTTGAAAGAATGGAAGCTCTTAAGAAGgCTCAAGACccaagaattaaaaaagaatcaaataaaTCCATTCCTGTGATTGGCTCCGACTCTAACTGGGACGCAGATGCTGAAAATGAGAATTCTGGAgACAAGAAAGACTCAGCTCTCCAAAGGATATTAAGTGGGCAGATAGATGTTCTTAAAGATAAAGGGAAAACAGAAGGAAAGAAGATCTTCCAACCAAAAGAAGCTGCTGTGCCTCAACTGCGAATGCGCAAAATAAAAGCTTTTAAACTGTCAGAGGTTACCAAGGATATGAGTTTAGAGGAACAGCACAAAATGCTTATGGCTGCTGTCGACAGAATAATCAAGGCTGAAAACAGTGCAGTTAGAAGTGGTGTACAACAGGAAAGAATAAAGCTGTTGATTGGTTTAGCCATCCAGGCAGGTGGTGATGTCAGAGAAGTTCTCCATAATTACATCCAAGAAGACCCCCGTATGCACTATGAGTTAATACAGTCATGGTTATATCAGGAGTACTTGATGTATGAGATCAACCAAGAAGAAGGCTATCCTCCTGACCTGTCAATGTATAATGAATGCATCTGCAGACTATTGGAGGGATTACAGCAGCGAATGGACCCCAAAGACAAGTTATTTACACGTGTGGTCTTGGAGGCTCCCATCATCACAGAACAAGTCATGCTTATGGTCAAGATACATTGTAAAAATCCAGAAACTCTACAAGTGGGGTTTGCTACCTTACGAGACTTGATACTCAAGCGTCCAGCTACGCAACATCAACACCTACAGACATTACTAGAATTAACCACACATGAGAAAGAACAGGTTCGTGTGCAGGCTATACACTCTGCTAAGAAACTACACACAAGACCTGAGTTTGCATTGGACATTGAGACTTATGCCATGTCCTCACTAGAACTGTTACTAAATGAGAAAGCACCTGTAGAGGAAGGTCTAGAACCAAAAGAATGGACCGACGAGAGCATCAAGATTTGTTTGTATTTATACTTGGCTCTGTTACCCCAGAATCATCAGCTCTTCCATCAGCTTGCTGTTATCTACACCGCATCTTCTCAGATGATAAAGAGAGTTATAATACGACATCTAGAAACCCCTATACGTGCTATCGGCATGGCGTCTCCCGATTTACTACATTTAGTGGAAAACTGCCCCACAGGATCAGAAACACTCATCGCTCGTATCCTCAACATCATCACAGACAAAGTCACGCCCTCGCCTGATTTAGTCAAGAAGGTCAAAGATCTCTACCACAGGCGTGTATCTGACGTTCGTTTCCTGATCCCTGTGTTAACGGGACTCGAAAAGCAAGAGATCATCGCTGTGCTCCCTAAACTCATCAAACAGTCACCCAATGTCGTCAAAGAAGTGTTTAATAGGCTCCTGGGGTGTTTTCACAGTGAAGGCAAGGTATCAGGTACCAGTCCCTTGAGTCCATCAGAGTTACTTGTAGCTCTTCACATGATAGAACCTTCAAAGAAAGCAAATGCAAACGAGTCTAAAGGAGACATACGATCTGTTATGAAAGCTATCAGATACTGTTTCGATGAAAAGACCATCTACACACAAGAAGTGCTGGCTATCGTGCTGCAGCAGTTGATGGAAGTCAATCCTCTACCAACGTTATTCATGAGAACCGTAATCCAGTCACTGAGTATTTGCCCAAGATTGATCGGATTCGTCATGAATCTCTTATCAAAACTCATTACAAAACAGGTCTGGAAGCAGCCTAAAGTATGGCAAGGGTTTGTCAAGTGTTGCCAGATGACAAAGCCTCAGTCTTTCTCTATTTTACTCCAACTTCCTCCACGTCAACTGGAGAGCGCTTTCGAGATATGTCCTGAGTTGCGTGACAATTTGGTAACACATGTACAATCATTCACTCCACATCAGAGAGCACACATACCAAGATCAGTGCTCCAGATCCTcgacaaggaaaagaaaatcgAACCTGAACAAATCGATAAAGAACAAGTGGATCCCAAGCAAGATAACATTGAGATCAAAGACGAATTATCCACCAAAAAATTACAATCACAATCGAGTGAAGACCGGAAGGATCGACGGAAATCTCGTCGGTCTCATTCGGGATCGCCGCCACCGAAAAAGGAGCGAAAGGATCGCGGCGAGGCGAGCGATAGTGAAGGGGAAATAGATGACTCTGAGACAGAGACAGTACATGTTAAACAAGAACCTGTTTGA

Transcript

EGACTEQ4350011936-PA

Protein

Uniprot

Uniprot term	Description
Q92797	Symplekin OS=Homo sapiens OX=9606 GN=SYMPK PE=1 SV=2
Q80X82	Symplekin OS=Mus musculus OX=10090 GN=Sympk PE=1 SV=2
Q7ZYV9	Symplekin OS=Xenopus laevis OX=8355 GN=sympk PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12295	Symplekin_C	Symplekin tight junction protein C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022075	Domain	Symplekin C-terminal	Interproscan
IPR021850	Family	Symplekin/Pta1	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15245	SYMPLEKIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06100	SYMPK; symplekin	-	Messenger RNA biogenesis	ko03019	deepkoala