Gene detail

Detailed information of EGACTEQ4350012861-PA in Actinia equina

Genomic Location: WHPX01000273.1:15591...18288
NR annotation: XP_031554273.1, homeobox protein Hox-B4-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350012861-PA

TTTCTTGACTTATTTACGATGTTTGAATAAGTTTTTCAGATTTCACTTATTAATAACTTAAATTTGTGTGTAAAACGTTAATTTCTGTGTATAAAGCTGTATTGGGAGCTTTTAGGTTAATTGAGATCCTTTCAATAACTAATAATGCCCCTACACCAGACATTTCAGGGGCCAGGTGACGTATGTCACGCTTGTCTGgctttttacattatttatttttattgacagTGACATTTATAAATACCCTTAATTCAAAGGCTTTGCATCAGTAGTGATGAGTACGCTAGCAATGCAGTCACCACAAACTTACCCGGCTTACTATGGTGGCGGTTTACAGAATAAGGAACCCCAGAACCATACCAATCCATTGGATTTTTCTTATTCGCAGTGTCGTATGCAATCGCCCAGTTACTACAACCAAAATGCACTGCCGAATTTTATGTCAATGTCACAAACAAGCCATAACGCGCAAGTTAATGGATACAATACAGAACCTGTTCCTCCGTTCCAACATGGACAGATACCCAACCAAACCACCGCCGACACGAGTCCTGTGGACCACGGCCATCAGTCGTACTTTCCAAATCAACAAGAACCCAACCAAAATTGCTCGTTCCATCAGTACGCTTGGCTGAAGAGCACCGCTCCTGAAAATTGGTGGCACAACGCTTCTTCAACCAACGCTTGGAGTAACCGAACCGAAGGCAAGCGTAAAAGGACCGCATACACGAGAAAGCAGCTCCTTGAACTAGAGAAGGAATTCCATTTTAACCATTTCCTGACGAAGGAGCGAAGATCGGAGATGGCAACACAGTTAAACTTGACAGAACGCCAGGTTAAAATATGGTTTCAAAACCGacgaatgaaatggaaaaaatgcaATGCCCAGGCACTTACGAAAACCAAGTCACCATCAAGCGCAACGGGTGGAATGCCCTCTTCAACTCGACAGGATTTACACATGACCAACAGTACATCAGCCTCGCAACTCAATGCAGACTCCCTCGGCAACTCGAACTCACAGATTCAGAACTGTATGGGCTTCAGAGGTACATAGATACACTCATTTTTTACTCAGGaaaggaaatgagaaaataCAATTGACAAAAAATTACAGGTTATTTGAAAGATGAACTAAAGAGTAGAGTAACATAGCTTATAAGGAAATAGAATTTATCTCGgcaatgaaaaaagagaaaatacctAAGAACTGCTTTGATGACGATTGGTTATTATCGACTAGAACAGACCGCAATTTAAGGTTTCTTTTTACAGTATGTGAATAGCAGCTTATCTTTTCAAGTTATATCTTTTACTTAGGTAAGGTTTCAGAGGTTTTATCGTGAGTGAGTGAGCGCGAAAATAACCCTGTATTTTTCAAAAGAAGAACTTTCTATTTAACACACACGCAGAAGAAGAAGAGGCTCTTTACAAAGTATGTGAATTTGAACTGTATATAATTGTGAATAAACCCAAATTGTTCCAAAAATGACTTGAAGAAACTCTAAAAAACCTTTGATATTATTGAAGTTTTAATTCAATAAGTGCAAGAACCTTCTTAGATCTTTGAGCAGTGTCCAAAAAGTGTCGAAACAATGAAACAGGTAGAAGAAACACCGGAAAACTTCAGAAACGGTACTTGATTTCTCTTTATTCGATAACCCTAAAGAACTAAAAGCTGAAGTAAGTTGGTTGTTTTCGATTAGATGTGGTTTAAAGTACGCCGTTGAACTGGCAACCATTCGTAAGCTAAGTCAGAAGGCTGTTCTACCATTGatattttaccattgttttctttgagaAGCCTTAATCTCGCTTCagaattttttcctttcttatcaAATTGGTAGTGTTGTTCTGTGAGGCATGTGAAAGGCTTTTAAACGGAGGCCAAAAACTTCTTGACTCGAAGGTCTCCGTGATTGACCTTACTTTTTCTTGTAACTCttatcattttttatactgTGAATGAAGTTTGGTGTCTTGTGTTGATCAAGAAACCGTGGACACACTATTTGGAGATATACAATTGTAGGGGTGAGACGACGCTTATTGAATAGAGAGCATTTAACTAACGCTCCTCCTATTTTCCTCAACGAGCGATACTGATCTTGACTTGCACATTACTCCTAAATATACTATTTTAATCCATGTAGAGTCTGAAATACATCGAACAAAGAATCAATCCTTTGTTACTTGAACCATGACCGTCATTTTCCCTTGGTTAGATTTTTGAATAGATGAAATGTTAGTGAAAGGCATAGATGATAAGGGATTTTGGACCTCACCAGTACAAGTGCGAACTACAAGGTGTAAATTCAAATCCTTACATTTCTGCtcaaa

Protein

Uniprot

Gene family

Uniprot term	Description
P81192	Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=187800 GN=HOXA4 PE=3 SV=1
Q9PVS4	Homeobox protein Hox-C4 OS=Oryzias latipes OX=8090 GN=hoxc4 PE=2 SV=1
Q1KKU6	Homeobox protein Hox-C4a OS=Takifugu rubripes OX=31033 GN=hoxc4a PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050296	Family	Antennapedia-type homeobox	Interproscan
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45659	HOMEOBOX PROTEIN HOX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952	Biological Process	anterior/posterior pattern specification	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09304	HOX_4; homeobox protein HoxA/B/C/D4	-	Transcription factors	ko03000	deepkoala