Gene detail

Detailed information of EGACTEQ4350013444-PA in Actinia equina

Genomic Location: WHPX01000339.1:493179...499217
NR annotation: XP_031566771.1, transformer-2 protein homolog beta-like [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

EGACTEQ4350013444-PA

aaaacaaaaacaagagagCGGCTATGCAGGCTAGTTTGACAgacgggttccctgtgttgcaCGGGTTTGGAGGGTTGTTAATATAGTCGCAGTGCTTCTTGGGAAGGCTTCGTTTCGTCGAAGAGAAGATAACTCGATTATTGTCGTTGTTTGTGATTAGGAAGGTCTTTAGACGTATTTAAAACCAACATGAGCGATTCAAACCATCACAGTGCTGCTGAAGAAAGGGAAGAGAGTCCAGCCAAAAGTGAAGAGCATTCAAGGTCTCGATCTGCTTCACGATCCAGATCAAGGTCTAAATCCAGGTCCGGCTCTTCTAGGCGATCCTCCAGGTCACGCTCACGCTCCAGATCAAAGCATTCTAGATCTTACTCCAGAAGTCGCTCCAGGTCTCGTTCTCACAGCCGTACGAAGAGTTCAAGGTCAAGAGAGAGGAAACGTAACAGATCTTACTCACGTTCTCGATCACCAAGCCCTTATTACAAGAGAAGGGACCATTCAAGATCACCTTTGTCAGACAGAAAGAGGCATCAAGGAAACAGGGAAGAACCACAGCCTAGCAGGTGTCTTGGTATTTTTGGCCTGAGTCTTTACACTACAGAGAGAGATTTGAGGCCAATATTTGAAAAGTATGGACCAATAGAAGACATAAACATTGTGTATGATCACCAGaCTGGTCGCTCAAGAGGTTTTGGATTTGTCTACTATGAGTATACAGAAGATGCAGAAATGGCTAAAGAAAGAACATCTGGCATTGAACTTGATGGCAGGAGGATAAGAGTGGATTTCTCTATCACCAAGAGAGCACATACTCCTACACCTGGAATCTACATGGGAAAACCATCACAGCATCGTGATTACAAACGTAGGCGAGATGACTACAGAGATGACTACAGGGACCGTGACGACTACTATCAGTGAGCGCAGCAGCGATCGCTATGAGAAAAGATATCGTTCAAGATCTCGTTCATACTCTCCAAgACGCTACTGAGTGATTGCAGCTGTTAGACAGTAAAGTGGTCTTCTTTGCTCTAGATAGATTAGGACTATCAACTGTAGCTTTGGCACAGTTATTGACAAAACTAAAAAGTTTGGCTTGCCgttgatttaatttttaagaATTCTAAATTTAGTAAGTCTTCAATTGCGTTTTGGTTAAGCTTGTCGATTTGAATATGTATAacctttaaaacaaattaactgCCCAAACAATTTAGAGATAggcttttctttccatttcatttctGGTTCCATCCATCCGTTACAtccttttctttatatttcaataCCTGTGTAAGCAGTCCTTAGTAGTGTATCTAAAGTTGATTTGCCTAAATTGAAAATAACTTTTGAACCTGGGAAAGTAGTTCTGAATCTAGTTAATAGTTTTACCTCTTTTCGCTTTTGCATACAGGTATAATGCAAAATATGAAGATAATAAAGTGAAGAATATGAAGAATAGTTGAAGAATGGGTTTAATCAAGTATTTCaagaaagaagataaaaattGTTAATCTAAAAAGAAGTATGAAGACCTTCCATTTTGTGGTCTGAAGATTTGAAAAAAACCAATCTTGTTAATCACTATTCATGAAGAAAGAGGCATGCAAAACCGGCCCAAATTTAGACGCAAGTTCTTCTGAAAGTCGCATTATTTTGACCAAACCTTCAaagtgaaaaaaagaagataaagaaaacgCGTTATAAGAAGATAGAAGATTGTGAAGAGAGAAGACTGAAGAAACGGTCACCGTTGAATCAGAGGTAATATCTAGTACGTCTCTCTCCTAATGCGCTTCGTGATTTCGGTGCTTCCACCAAATTTTAAAACTGTCGATTTTTATACGtggttttattgttttgattttcgGGGGTCCCGGAActtttctttgaaatttggtATTAATTCAAGGTCGTAGAATTCCCTCCCAGCCTAAATTTTAGAAGTTCTCAATACCACACTAAAAGGTGCAGCTTATCCCGTGCACTACCGATTTTACCTCCTCTAGATCTTTCGCCTGACGTGGTTTCCCAATAACCCGAATAtcagaaattaaaaacaattaataacattaaaataatcaataatgctAACTAATCAAACTAAAAacataattatttgtttgaagCAGAAGAATAGtctaaaatattgataataataatagtaacttaatatttaaaatataaacataaacTTGAGAAGCTTTTGGTAACACAGTCCTGTTGGGCAGTCTTGTTTGACGCACACGTCAAACTACCATCTATATACATGAAACCTGACGAAACAACATCTGAGTATGCTGAATACAGGTAAAGTTTCCAGAGTAGAGCAGATTTTTGTTAAACTGTGAAACTTACGGTATGGTCGTGTCGTAACCGTGACAGCAGAGTGAcccagcattctgattggatgacaAGTCACTGGTTGATAAGGACTTTTTCTGTATCCTGTCATGTGCTGTGATGTTTCCCATActctcaatagtccccttcacggttccctgtgCCATATTgtaaggtagccgtgcctttgaatcgaagggagatgaacggtgagtttgcaatgatagagaccttttttaacaccttggacaattattcacaggtctctatcactgcaagctcaccgttcgtctcgcttcgatgcaaagccacggctacctttcaagatggcgcaaggaactgtgaaggagactattgcCGTGCAAAATCGTTGTGGGTTCAAAACAGACAAGCTGAGACCAAATAGTATTCTAGGGAATTACATAATTATCctctgatgtattcatttgagaGTCGATATAAAATGTGTTAAAAGCTTCCATGCTCTTCGTCAGTGCaacgatagagacctttttactgGTGTTTCAAATATTGTTCCAACCAAAAATTCAATTGCTGTTTTGATGTGcttcttatataaattttaaaatacgcTCTGACGGctgtacaatatatatattttacaatagTTGCCCCCTCTTCCATTATGTCTAAATtataacaatagaattcaagatggccgacgtATCTGGTCTATGAACATTCCACGAGTTTTATCACTACAGTCATatctcgccttgcggacaccccgatattacggacaccttgctattacggacaggagaaaaatccccgacaaaaatactgacaaagaaatgaccgtaaataattttcgctattacgaacgctcgctattacggacatgaagtgacgATCCCGAAGGTttccgctgtaacgagagttgactgta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBT6	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1
P62995	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1
P62996	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR050441 all species →	Family	RNA-binding motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034 all species →	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048026 all species →	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12897	TRA2; transformer-2 protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.