Gene detail

Detailed information of EGACTEQ4350013879-PA in Actinia equina

Genomic Location: WHPX01001448.1:1590...20839
NR annotation: XP_031567111.1, CCR4-NOT transcription complex subunit 3-like [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

EGACTEQ4350013879-PA

ATGCCAGAGCTTGCGGTTAGTGACAAGATATTTGAGTCCTTATCGAGCAGCTTTGATGAAGAACTTGGTGGTTTTGGTGGTGCACCTAAATTTCCCCAACCAGCCAATTTTGTCTTCCTATTCAAGTACTACAAACACAAGAAATCTGACAATGATGGCAAAAGAGCTCTGCACATGTGCTTGAAGTCCTTAGATTGTATAGATAAAGGTGGAATACATGACCATGTCGGCCAGGGTTTCCATAGATACTCGACAGATAGATATTGGCATGTCCCTCATTTTGAGAAGATGTTGTATGATCAGGGACAACTGGCCTGCTTGTATGCTGATGCCTTCCAGACATCCAAAGACTCCAAGTATGCTGACACTCTCAGAGATATTCTACTTTATGTTATGAGAGATCTTAGCCACAAGcttGGTGGTTTTTATTCAGCTGAGGATGCAGATTCTCTTCCCTCGTATGACCAAGAGGACAAGAAGGAAGGTGCATTTTGTGTATGGGAAGAAGAAGAGCTGAAGAAGCTGTTGTCAGACACTGTACCAACAAAGTCAGGAGGCACAATCCCATTATCGACCCTGTTCATTAAGCACTATGGAGTTGAAACTGCTGGCAATGTCAAACCACACCAGGATCCCCATAAAGAACTCGTCAAGAAAAACGTTCTCATCGTACGCACCAGCATAAGTGAAACAGCAGAAAGCCTCGACATAGAGGAAGACGAAGCCAAAGAACAGCTCAGCAAAGCGAGAGAAATTCTATTTGAGGAAAGAAAACAACGACCTCCACCACACTTGGACCATAAGATTGTGACGTCATGGAATGGTCTAATGATATCAGGGTTTGCTCGAGCTGGACAAGTCCTTGGTGAAGAGGTATACACCCTAAGAGCCATCAAGGCTGCTGACTTCATCAGGAAGAACTTATATGACAAAGACACGAAGGAACTTCTAAGGAGTTGTTACCGTGAAAACGAAAACGAAGTTTCACAAATAGCGAACCCAATCAGTGGCTTTTCGTGTGATTACGTCTACTTGATTCGTGCTCTACTTGATCTGTATGAAACAACGTTAGACGAGCAATGGCTGAAATGGGCTGTTGAACTACAGGAAAAAACAGACGAGCTGTTCTGGGACAAGAACAAGGGCGGATACTTCGCAGTGGGTGAAGGCGACTCAAGCATTCTCATTCGAATGAAAGACGAGCAAGATGGCGCTGAACCAAGTTCAAACTCTGTTTCCACGAGCAACCTCTTACGACTCGCAAACATGGTGGACTGCGAGGAATATCGCAAGAAAGCGGAGAAGATTTTCACCATCTATGACAAAATCTTAACACAGATTCCTATAGCTTTGCCAGAATTGGTTGCAAATCTGACGATCTACCGAACAGGGATAAAACAGATAATTATTGCTGGAGACCGCGACGGAGATGACACGAAACAGCTTATCAAGTGCATTCATTCGCACTTTATTCCCAACAAAGTTGTTCTCCTGTGTGATGGCCAAGAAGGATTTCTATCGAATAAGCTTGCTATTTTTAAGAACCTTCAAAGAATCGATGGAAAAGCCACCGCGTACGTCTacTACTATTGTCAAGGTTTAGGTACCCTAGATCATTGTGGAGTTGTGCAGTTTCGAAGCTATGGTGGTATTAAGAGATACGTCGAGGTAATGGCAGATAAAAGGAAGCTTCAAGGTGAGATTGAGCGCTGCCTTAAAAAAGTCAGTGAAGGAGTCGAAACATTTGAAGATATCTGGCAGAAGGTACATAATGCATCGAATTCAAACCAGAAGGAAAAGTATGAAGCCGaccttaaaaaagaaattaaaaagttaCAGCGACTACGAGATCAGATTAAAACTTGGGTGGCATCCAATGACATCAAGGACAAAAAAACGCTGTTGGAAAATCGAAAACTCATCGAACAAcaAATGGAACGTTTTAAGGTAGTGGAGAGAGAGACGAAAACCAAAGCATATTCAAAAGAAGGATTAGGGCTAGCAGCAAAGATTGATCCAGCAcagaaagagagagaagaggCAAGACAGTGGATTACAGATGTCCTTGAGAGAATAAATTTACAGATTGATCAGTTTGAGAGTGAAGTAGAGATGCTACATGCAGgttctaaaaagaaaaagcttGAAAAAGATAAACAAGAGAAAGTTGATGATCTTCATATATTGGCTGATAAACATAGATTTCATAATGACAAACTAGAGATTATACTCAGAATGTTGGACAATGGAACGATTGAAAGTGATGATATCAGGCAACTCAGAGAGGATATGGAATACTACCTGGACTGCTGCCAGGAGCCAGATTTCCAGGAAAACGAATTTATGTATGATGATTTTGATATGGAAGGAGAAGAGGATGGAGATATTGATTTTGATTCATCATTATTAGAGTCAACAGAAAATGACGTCGATGACGATCATGGACTTAGTAATAATGTCCCTAGCTCACCTGCTACTTCTATACCAACCTCTCCTACTTCCTCTAACTTTCCATCATCGCCATCTTCGATCCCTTCAACTATATCTTCCAACAAGAACCATCAAACAACTCAAaattctCCAAGGAAAAACTCCAAAGGCAGCTTGCCGGCAAACAATATACTTCAAGGAACGACAAGCCAGCGACCAGTACTGAAACCAACATTATCGTCTTCTGGACAACCGTCAATGACAGCAGTCAATAGTTCTGAAGCCAAGACAAGTAATGGATCATCTAAACCAATCAATTCTGTGATGACAAACTCGTATGAAAACCACTCAACTAGTTCTAACGATATTGGAGAAGTATTAACCAATCCCAAGACACCAGTATCAGAATCACCGCCTCCCCCTGTGTCAGGTTACGCTGTCGTAGCAGGAAGTCAACAGAACCATGTAGATGCAACTCCAAGCCAACCCCCTCGAATGGTGAACCATACCCCTCTACCTAGTAGTACGAATATCGTTAGGTCTACGTCATCAGTTGTGAACAGTCATGATACGTTACAAAACAAAGatGCAAGTCTTTCTACTGACATTGCAAACCTGGTATCATCAGTTTCTTCCCTTTCCATGGAAACTATGTCTACTGCAGCGACATCAAGCTCCTTCCCTATGCGTAATAGCATACCCAGTAGCAATCCAGTCGCATCAGTAGTAGGGGCTCCTCCTCTATCTTCTGCTCCTTTAACGATTTTACCTTCATCCCTACCATCAACTTCTGTACCCAGTTCAACTGCAGCTCTAAGCATGATGGGAATGCCTGTGAGTCTAACTTCCTCGTTATTAACCAGTACTACTAATACAGCATTAAGTACACCACCTATGTCTTCAGTGGAATCTTTAGCAGTATCAACGCAATCTGTAGCGTCTCTGATCAATAATCCACACTTTATGGCGAATACTGCACCACGACATGTCACTACGTCAGATCATTTTTCATCACTCAAGTCCATTGCAGCTCAAGCGGTCGCCACGGCAAATTTACACAGTCAGGTTCAGGTTCCTATGGATTATTCTGCTGATGGAAGAGGGCTCTTCGACACCACTTCATCAAGTCGAACAGCAGAAGAAACAAAAGGTCCAGTAGAAACCAACACTGCACACCTGCAGCCATTACTAGGCGTGGCACCATTAGGCCCTGTACCCCTCAATAAAGAACGGTGTTATCAGTTGGCAATGCTAGAAGCAGCATACCATCATTTGCCCCTTCCTGCTGACTCAGAGAGGGTTAGGCCATGCTTGTCAAGGAATCCCTACCCTGCTCCCCCTTACTACCACCAACACCCTCCCTCCCATGTGGAAAATATAGATTTCTTCCAAAGGCTACAACCTGAAACGTTGTTCTTTATTTCTATTATCAAGAGGGGACCAGAGCTCAGTATTTGGCAGCGAAGGCACTTAAAAAACAGTCTTGGAGATTTCACACCAAGTACATGA

Transcript

EGACTEQ4350013879-PA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TB22	Spermatogenesis-associated protein 20 OS=Homo sapiens OX=9606 GN=SPATA20 PE=1 SV=3
Q80YT5	Spermatogenesis-associated protein 20 OS=Mus musculus OX=10090 GN=Spata20 PE=1 SV=1
Q6T393	Spermatogenesis-associated protein 20 OS=Rattus norvegicus OX=10116 GN=Spata20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006117 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04065 all species →	Not3	Not1 N-terminal domain, CCR4-Not complex component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR038635 all species →	Homologous_superfamily	CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily	Interproscan
IPR007207 all species →	Domain	CCR4-Not complex component, Not N-terminal domain	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR024705 all species →	Family	Spermatogenesis-associated protein 20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42899 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EGACTEQ4350013879-PA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.