Gene detail

Detailed information of EGACTEQ4350020517-PA in Actinia equina

Genomic Location: WHPX01001219.1:1005733...1011565
NR annotation: XP_031556483.1, high mobility group protein 20A-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350020517-PA

TATTGAGTGTTCGCCATGAAATAGAGTTGGGCTTTGaaagaagcaagaaaagaaCCCCCCTctaaaaacaaccaaaacatCAATTACTTCCGTTCAAAAATTTCTTACAAACTCACTTCCTGTTCAATAGTTTGATCTAAAAGTGGATGCGATTCCCATGGATTTAGGAGCCGATCTTGGTGCTTCTTGTACTTCATCTCCTGTTCTGGCCCATGTGCTTCATTCGAATGCCATCGTTTCTTCTGCAGTTAAAGATTCGTCTTGTTATACTAGCGGCTTAGCTGTCCTTACACCGACTCTAGATGGCCATGGGACGGTTACCTCCCTGTCTGGTTTTAGCTTGAATAGCTTCGATCAGGTTGATGTGAGTGGGAACATTGTGAAGCATGAATCTCAGGATCATAATTGTGATCTGTCTGTAGCTAGTGTTGGAGAAGACGGAAGGCTTCGTTTTACTACCACTAGTCATGTTACAGTGGCAGACTTCCACCATACATCACAAGAAAGACAGAACCTTCATTCTACTGAGGCAGATTTTGTTTCTGACTTATCTCAAGTTGAAATTCTTAGTGGAGCTGACAGTGAAGACAGATATGTAGGAGAGACAGTCTGCCATGAACACGAGCATCACCATGTTGAGACATCTTTGCACCATGAAAAGGATCTAGTTATGGAGAAGACACATAAAAAAAAGGGTGGATGGCCAAAGGGAAAAAAGAGACGAAAGACAATCAGAGATGTAAATGCTCCCAAGGCTCCATTAACAGCATATGTACAGTTCCTGaatgaaaacagagaaaaagtCAGGGCTGAACATCCTGACTTAGCCTTCCCCGAAATAACAAAAATACTTGGAGCACAATGGAGTAAAATGTCACAGGAGGAAAAACAGaaatatctGGATGAAGCAGAAAGGGAAAAAGATAGATATGTAGCAGAGCTGGAAAGCTATCAACAGACTGATGcttacaaagcattcctcaagaagcaggaagaaagaaaaagaaaatGTTCAGAAGTTTCTGATGGTGGTTATTCAAATGGAATTGAGCTATGCGAAGAAGACGATTTGTATTGCAAGCCATGTAATCAGTATTTCAATAACCTGCACaacaaaaaagaacatatatatGGGCGAAAACACATGCAAACTGTCAACGGTAAAGCCAACGAtggagaagaagaggaagatctTCCTGGATTTAATATTCCTATATTCACGGAGGAATTTCTAAATTATAACAAAGttaAAGAAAATGAATTACAACAGCTTCGTAAAACCGCCACCGAATACGAAGATCAAAACTCCATTCTCTCCAAACACATTAATAACATAAAACAAACTATCGAAAAAATCCAACTAGAATCCAACACCCAGCGAAGAACCAATGAACTCCTCCAACAACATCTAGACACCTTACGCACTCTCTTAACGCATGGCTTTCAGGAATTACCGTTGCCCAGAACAGATGAGTTGCCTTGCATTGACTCTATTGATAACTATATGACTAAGTTATATTCGATTATTCTAGACTCGCCACAAGAAAACGAGGGACTTATCGGCAGTGTACGAGATATCGTGTCTAGAATAAGCTTCCAAAAGTGACTGGCTTTCCATTTCAGTGCAACATTTCTATTACTATTAGAACAGGTCTATACTGGGTTCATTAAACAAGGTGTATTCTGGTCTAGATTTCGTAATAAAAGCACCATATAAGGCGTGATTAACCAAAGATCTTTGTCGACAAGCTAAACCAGAATGCAACACGGTGGTTGTCTGTACCAAGGCGTGGCTAGAAGGGTTTGACGACAGCCGTACTGTAGGACAAAACAGCATATTTACTTTTTCTTGTGGGAAACGAATTGTATTGTTTAAAAGCGTTGCATTGTTCACGTGCTCTAACACTTCTCTATACTGCGTGACTGTCAGGAGTGCCCTTTATTCTGCGTGACTGTTTGTGTAATTCAGGTTATTTATTACTCTAAGGCGATAGTTAATATCGACAAAGAGGTCACTTGACCAATTCCCGCCGTGGTTGGGAGAGAAGATCGTATTCGTCCCCCTGCCTTCCCCCACTCTTTACTCAGTATTTATACTTCCTAGCCTaggaatttcttttaaaatgaaTGAAGAGTATTGAAGATGCATCCAAGCTTTCTCAAACAAACAGAAATTAAAATTGGCCAATAAACTTATCAAATGCAAAATGATATGTAAATAACACCAATTATTTCAAACATCGGAGTATACTttgtattcttcgtttgcaataagctttttcatagtttaagaatcgattccactgcgcatgcg

Protein

Uniprot

Gene family

Uniprot term	Description
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
Q9NP66	High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1
Q5ZKF4	High mobility group protein 20A OS=Gallus gallus OX=9031 GN=HMG20A PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051965	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24660	HMG20A; high mobility group protein 20A	-	Chromosome and associated proteins	ko03036	deepkoala