Gene detail

Detailed information of EGACTEQ4350021017-PA in Actinia equina

Genomic Location: WHPX01001372.1:250729...263207
NR annotation: XP_048577552.1, probable ATP-dependent RNA helicase DDX10 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350021017-PA

atggcggacaaaaagaagaggttttccctcgaaggaagaaaaaaagctaaaaatccAAGACGAATAAGCCTAAAAGCCTCCTGGAATAGTGAACAAAGAGAAATGAAAGAGCTAGAAGGACGGCGCCATGAGATCGATGTCGCTTTAGTGTCCAAATTTTCAGACTTTCCGATTTCAAAACGGACAATAGAAGGTCTTACTAATGCTGGTTATTCTAGTCCAACTGATATCCAGAAACAAGGGATTGCAGCAGCTCTCAGAGGGTGTGATATGCTGGGAGCTGCCAAGACAGGATCTGGAAAAACTCTTGCATTCCTGATTCCTGTCATTGAAACACTATGGAGGCAAAAGTGGTCTTCCATTGATGGAATGGGAGCACTGATCATATCCCCAACAAGAGAATTGGCTTACCAAACATTTGAAGTTATTGTTAAAGTTGGAAGCAGACATGATTTATCTGCTGGATTGGTCATTGGAGGAAAGAATCTTAAAGAGGAACAAAGTAGAATCAGTAAGACAAATATCGTTGTGTGTACCCCTGGGAGACTACTTCAGCACATGGATGAAACACCTAATTTTGAGTGTGCTTCCCTTCAAGTACTTGTGTTGGACGAAGCAGATAGAATACTTGACATGGGGTTTGCCTCAACATTAAATGCAATTATTGAAAATCTACCGACAGAGAGACAGACATTACTTTTTTCTGCAACACAAACAAAGTCAGTTAAGGATCTGGCAAGACTAAGCTTAAAGGATCCAGAATACATTTCAGTTCATGAGAATTCAAAAACCAGTACTCCATCAAGGCTCACTCAGAACTATGTCGTTTGTCAATTACCAGACAAAATAAATTTTCTGTACTCCTTTATTCGTAATCATCTGAAGTCCAAGATCTTAGTGTTTTTATCGAGCTGTAAACAGGTGAAGTATATCTATGAGAGTTTTCGTCGTCTTCGTCCTGGAATCCCATTGATGGCCCTTTATGGCAAGCAGAAGCAGCTCAAGAGAGTTGGAATATATGATGAATTTTGTAAAAAGACTCACTGTGTTCTGTTTGCTACTGACATTGCAGCAAGAGGACTTGATTTTCCTGCTGTCAATTGGGTGATCCAATTAGATTGTCCTGAAGATGCAAACACATACATACACAGAGCTGGCAGAACAGCAAGATATCAGAAAGATGGACAGTCTCTACTTGTGCTTTTGCCTTCAGAAGAACCAGAAATGTTAAAGGCTCTTGAAGAAAAGAAGGTTCCAATAAACAAGATAAGAGTTAATCCGAAGAAGTTAACGAGTATTAAGGCAAAACTGGATGCGTTCTGTGCACAGGACCAAGAACTGAAGCACTGGGCACAAAAGACCGTCGTGTCTTATGTACGCTCAGTATTTCTTCAGTCCAACAAGAAGGTTTTTGATGCACACAAGTTACCTGTTGATGAGTTTgctttGTCGTTGGGTCTGCCAAACACACCAAGAATAAGGTTCATGAAGAAAGCAGAAAAGAAGTTCGGAAACCATTCCACAACAAGCAATACAGAACAGGACAGACTCACTTTCTCAAGAGTCGACATTGGTGATAGTGATAGCGACAGTAACGACGAGGAGTCTGATGAAGATCGTGATGTTAATGATAACACAGACGGAATAAAAGCTAGTTTTAGTGGTATTGATGATACTGTTGACCAGGATGATCAAGTTATCACCTTGAAGAGACGAAATGTTGATGTAGTACCCATGCCCCTGGAGCCCGAAGAAGGACTGAAGTCAAAGAGCTCAAAGAAAGATAAACCACTTGTCTCGAAGATAAAACAGGTCAAGAAACTAGTcaacaagaaaataaagatgAATACGAAAATATTGTTCGACGAGGAAGGCGAGGTTGTGTACAGCAATGACTCAGCACCAAAAGAGTACGAAtctgaagaagaagaggatATTGAACCAGTCCCTCTCGGTCAAGAGGATGGTCGGGTTGTTGGCGGGATTTCTGTCGAGGAGTCCCGCAGACTGCTACAGATCACGGACAAAAAAGATcgggagagagaaaagaaaagaattcgtGAAGagcacaagaaaaagaagaagaaacaaaagacaaaCCAGGAAGATGATGAAAtggtgtgttttttgttttcgtaa

Transcript

EGACTEQ4350021017-PA

Protein

Uniprot

Uniprot term	Description
Q80Y44	Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2
Q5ZJF6	Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1
Q13206	Probable ATP-dependent RNA helicase DDX10 OS=Homo sapiens OX=9606 GN=DDX10 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13959	DUF4217	Domain of unknown function (DUF4217)	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR025313	Domain	Domain of unknown function DUF4217	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031	RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14776	DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala