Genomic Location: WHPX01000544.1:397698...413380
NR annotation: XP_031572827.1, glutamine--tRNA ligase-like [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350022463-PB in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P47897 | Glutamine--tRNA ligase OS=Homo sapiens OX=9606 GN=QARS1 PE=1 SV=1 |
| Q3MHH4 | Glutamine--tRNA ligase OS=Bos taurus OX=9913 GN=QARS1 PE=2 SV=1 |
| Q66H61 | Glutamine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Qars1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002706 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04558 all species → | tRNA_synt_1c_R1 | Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 | Family | Interproscan |
| PF04557 all species → | tRNA_synt_1c_R2 | Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 | Family | Interproscan |
| PF20974 all species → | tRNA-synt_1c_C2 | tRNA synthetases class I (E and Q), anti-codon binding domain | Domain | Interproscan |
| PF03950 all species → | tRNA-synt_1c_C | tRNA synthetases class I (E and Q), anti-codon binding domain | Domain | Interproscan |
| PF00749 all species → | tRNA-synt_1c | tRNA synthetases class I (E and Q), catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020056 all species → | Homologous_superfamily | Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal | Interproscan |
| IPR042558 all species → | Homologous_superfamily | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1 | Interproscan |
| IPR011035 all species → | Homologous_superfamily | Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily | Interproscan |
| IPR042559 all species → | Homologous_superfamily | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2 | Interproscan |
| IPR007639 all species → | Domain | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal | Interproscan |
| IPR007638 all species → | Domain | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 | Interproscan |
| IPR049437 all species → | Domain | tRNA synthetases class I (E and Q), anti-codon binding domain | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR020059 all species → | Domain | Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain | Interproscan |
| IPR020058 all species → | Domain | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR000924 all species → | Family | Glutamyl/glutaminyl-tRNA synthetase | Interproscan |
| IPR050132 all species → | Family | Glutamine/Glutamate--tRNA Ligase | Interproscan |
| IPR004514 all species → | Family | Glutamine-tRNA synthetase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43097 all species → | GLUTAMINE-TRNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004819 all species → | Molecular Function | glutamine-tRNA ligase activity | Interproscan |
| GO:0006425 all species → | Biological Process | glutaminyl-tRNA aminoacylation | Interproscan |
| GO:0043039 all species → | Biological Process | tRNA aminoacylation | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0017101 all species → | Cellular Component | aminoacyl-tRNA synthetase multienzyme complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01886 | QARS, glnS; glutaminyl-tRNA synthetase | EC:6.1.1.18 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
