Gene detail

Detailed information of EGACTEQ4350023409-PA in Actinia equina

Genomic Location: WHPX01001335.1:364690...369289
NR annotation: XP_031562656.1, nucleolar and coiled-body phosphoprotein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350023409-PA

ATGGCGACCACGAGTGTCCCAAGTGATGTCTATCCATACATTTACTCGTTTTTAGTCGACAATAAGCTGAATAAAACTGCTAAAGTCTTCGTGAAGGAAGCTGGAATAGATCTGAAATCAAGAACTCCAGTTGATAATACTTTACTAGAGTGGTATGATGCATGGAATGCCACATGTTTAAGGTTTGagcaaagcaaaagaaaaagagaaaaaataagcaaaaatgaACCACCGAAAAAGAAGCGAAAAGCAAATGAATCTTCATCAGAAGATGAAAGTTCAGACGAAtcagaggaagaagaaagttctgaagaagaggaagaaacaACAACACCTAAAGCAAGTAAagtaaaacaaaccaaaaaggaTTCATCTAGTTCAGAAAGTGAAGAAAGCTCTGAAGAAGTGGAGAAAACAACACCTAAAGCAAGTAAagtaaaacaaaccaaaaaggaTTCATCTAGTTCAGAAAGTGAAGAAAGCTCTGAAGAAGAGGAGAAAACAACACCTAAAGCAAGTAAagtaaaacaaaccaaaaaggaTTCATCTAGTTCAGAAGACGAAGAAAGCTCTGAAGAAGAGGAGAAAACAACACCTAAAGCAAGTAAagtaaaacaaaccaaaaaggaTTCATCTAGTTCAGAAGAAGAAAGCTCTGAAGAAGAGGAGAAAACAATACCTAAAGCAAaaagttcAAGCTCAGAGAGTGGAGAGGAAAGTTCTGAGGATGAAAAaccaaagcaaaagaaaacaaaagtcaaaaataaaaagaagagttCTTCAAGCTCAGAGAGTGAGGATGATAGTTCCGAGgaagaaaaaccaaagaaaagtaaaaaagcaaccaaaaatgatgaaaaagccAAGTCTTCAAGTTCAGAGAGTGAGGATGACAGctctgaaaatgaaaagaaaaagaaaaatgaaaaaacaaagaaaagcaaaatgaaAACCAAGAAAGAATCCTCCAGTTCAGAAAGTGAAGATGACAGTGATGAAGAAAGTTCAGAAGatgaaaaaccaaagaaaatgaacaaaaacgtCAAGGTACCAGAGCTAAGTAAAGACGATTCCAAGCATTCAAAGGCTCAAGAAAGTAGTTCATCAGAGGAGAGTGAAAGTGAAGATACAAGTGATGaaaattcatccaatcaaaaaccAAAAGTAACAATTGCTGTTTCAAAACTGACAAATGGagtcaaaagcaaaaagaaaaccaaacaaaataGCAAACAGAAATCCCTAGCAGATAGCAGTAGCTCAGAAGAAGAAAGCTCAAGTGAAGATGATGAGGAGGAAGATTCCAGTGATGAAGAAcctgcaaagaaaaaaacagccaAAGAAAATAGTGCTAAGAAGAGTAAAGCTTCAGATAGTAGTGACTCTGAGAGCAGTGAGGAAGAAGAAAGTgatgaagaagagaaagaaaagcctaaaaagaaaagcaaaaacacTTTGACCACTCCAGCGGCATCATCTACTCCAAATGCCTTGAACACATCAAGCAACAAGAAAGAGaacaacaacaataacgtCAAGACACCCTTTCGAAGGGTAAAAGAGGAAGAGATAGAGGTTGATCATCGATTAAAAGACAACAGTTTTGAGGCCAAGttggGAGCCACCGGTGACTGGGGCGAGAGAGCCAACAAAGATCTAAAATTCACCAAAGGCAAGTCCTTCCGCCATGAGAAGACAAAGAAGAAACGAGGGAGCTATCGAGGTGGTGCAATCAGTACTACCATTAACTCCATTCGCTTTGACAGTGATTGACATGTGATTGGCACGTGACTGACACGTAGAGCAGTTtccgtatgactgtgaaaaagtcggtgCTGTATAAGTGCCTTGCCCCGACCTTGaggttttctagaattttgattgggaaaattttttttcgcgcaatgtgattgatctGGCACTGCCGCGACCTTGGTGTGATCGTGTGCGCGCcggtgttccgggtatttgattggatggagagtaaattctcgtgcagtgtgattggtctggAGTATGCCTTTCATTGTGACGACAGTGTTCGTGCGGTGAGCtgttcacagtcatacgaaaactgctctattgtaCACGTGAGGCGTACCTGAGTTCAAATGAG

Protein

Uniprot

Uniprot term	Description
Q14978	Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2
E9Q5C9	Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1
P41777	Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05022	SRP40_C	SRP40, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR007718	Domain	Srp40, C-terminal	Interproscan
IPR039191	Family	Nopp140-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23216	NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25818	NOLC1; nucleolar and coiled-body phosphoprotein 1	-	Transcription machinery	ko03021	deepkoala