Gene detail

Detailed information of EGACTEQ4350025003-PA in Actinia equina

Genomic Location: WHPX01001449.1:99027...105369
NR annotation: PFX18982.1, RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350025003-PA

ATGGCATCGAATCCCTTTGTAGATCAGGGAAAGGCAATACTAAATAAGGTTCGAGAGGAAATAGTTGAGAGATGGTTGAACGGTACTTCTCAAAATCAAATTGCAAGAGAATTGAACTTAGCAAAAAGCACTATTTGGAGCATTATTGATAACTTTGTAGAACGCGGACATTGCAACAAGAATGCCGGAGGGAACAAAACTCGAACCACACGCACCAATGATGTTGTCGCTTACACAGAATTCTGGAAACAGAAGAAACCGAGTACAACGGCAAGAGAAATACAACAAAAGCTGGTCGATAACCAATTTCGTTCTACATCGTTGGATTCGTCTTCTATCTTGAACGAGTCTATTCGGCATTCTTCTTCTGGAGATGACGATGATATCCATCCCCTTATCGACCTTGGCTTGGACGACAAAGGACTACGAATTGGCCACTGGAATGTAAATCGCTTATCGTTGCCAAAGCTGGATGAGATCAAATTATTACTTATTGGAAAGAATAATGTTCCACAGCTCGATTTGTTATTCCTCAATGAAACCTTCTTAAGAACAGATATTCCAGATTCAATTTATTCTGTTCCTGGTTTCAACATATTTCGGCCGGATAGGCGTTCTGGAGCTGGTGGTGGAGTTTTGGCCTTCGTAAATGAAAATTTGAAAGTTAAACGCAGAACTGATCTCGAATCTGCTGATTTAGAGATTATTTGGCTGGAGGTCTTCCCTTTCAAGTCAAAGAGGTCTTTACTCCTTTCAAGCATTTATCGGCCACCATCTTATTGCAAAAATGATGATCAGAAATTGGAGGCTAATATTGAAAACGCTTATCTATTAAATAAAGAGACAATATTATTGGGAGACTTTAATATTGATTTTCAAAATGCTTCACGTTTCAACAAACATCACCTTTCTAAAGTTCTGAGGAGCATGAATTTTAAACAGTTGGTTAAGGACATTACGCGTCCAATTAGCGGTACTTGTTTAGATAATATCTTTTCAAACCACCCCGAGCGTGTTATGGATGTTCGCACGATTGACGTAGGATTATCAGACCACCTGCCTTTGGTAATGGTTCGTAAATATTCTCGTTCTGATCCTCAACGTTGTAGAGACACTAAGTTTATCAAATATCGCAACATGAAGAATTTTAATGCCGACAACTTCTTAGCGACCTTGAAAGAAGTCCCATGGGATACAGTATATCTGTTTGATGATATCGACGATATATTAGAATCATGGGaatctttgtttaacagtgCGCTCGACTCTCATTGTCCATGGCGTGACAAACGCGTCAAGAATCTCAAACAGGTTCCTTGGATCACCAAACCAGTGTTGCAACAACTGCACCTCAGGGACAATCGTCTTAAAGCCGCTAGAATTTCTGGAATGTCTGAAGATTGGGAAAAGTACAAAGTTGAGAGAAACAAAGCAGTGTATATGATGCGTTCCGCTAAGCGTTCATATTTTAACAACGCATTTGATGAACAAAAGAATAATCCAAAGGCGATGTGGAATACAATCAAGTCCTTGACTGGATCTTCCAAGGGGAAGAAAGCCATCAACAGTATAAAAGACGGTGTTTGCTCTATTGATGATAATAAACAAAAGGCTAGTTTATTCAATAAGTATTTTGCCTCTGTAGCTGATTGTATAAGATCTACTATGCCCATCACCGCCTTCAATATAGACAGACTGATTAATTTTGTCAAGTCTAGAAAAGACCCAAGTACAACTTTTACTATCCCTACTATTACAAAGCCTCAAGTCATCGCTAGTCTCCTACAAATCAGTCCTAATAAAGCAGTTGGCATAGATAAAATAAGTGCTCGTCTATTGAGGATTGCGGCCCCTGCGATCGCCACTTCACTGACGCGAATCATAAACTTCTCATTTGAATCTGGTGTGTTCCCCAAGCGTTGGAAATTGGCAAAAATAACACCTCTCTTCAAAGCTGGTGATGAAGACGACGTTTCAAACTACCGCCCAATATCTGTGCTTCCAGTCCTATCCAAAGTAATTGAGAGGCATACCCATGACTCTCTGTATAAGTATCTTTCAGATAATGATCTTCTTTATCAGAGACAGTCAGGTTTCAGGAAGCGACACAGCACAGAAACAGCGTTAATCCAGATTATTGACGGCCTCTTATTCAACCTAGACAACAATCGTGTCAATGGCCTCGTTCTGGTAGACTATCGCAAAGCCTTTGACATGGTCGATCACGAGATCTTGTTGGAAAAGCTCAAGGCCTATGGAGTGGTTGATTCCTCACTGTCTTGGTTCCATTCATATCTACTTGACAGGCATCAACTTGTTACTATTGATGGCACAAATTCTGATTATGCTCACATCAAGCATGGGGTGCCTCGGGGGAGCATCATTGGACCTCTCTTGTTTATTGTCTTCATAAATGACTTACCACTCCATGTTAATTCATCACAAGTCGACCTCTATGCTGATGACACCACCCTCTCTTCGTCTGCAGACGTAAAGAATATCGTCAAGCTTCAAGATGCACTAAACAATTCTGTGACAGAGGTACATGACTGGGCTACATCCAATAAGCTTCCCATCAAtgagaaaaagacaaagacactgATTGTTACTGGTAAGCTAACCGCTAAGAGAAGAAAACACAACGTCTGTTTATATCGGGGAAATACGGAGAAACATGGTCATAATTACTTATCTTCGTTTATCATATCGGCGGCTGTTGCTAATGTGTCAAGATTGCCAAAATGTGTAgtgctttttttttattctttgagtTAG

Transcript

EGACTEQ4350025003-PA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan