Gene detail

Detailed information of EGACTEQ4350025312-PA in Actinia equina

Genomic Location: WHPX01000502.1:34876...39126
NR annotation: XP_031573463.1, synaptobrevin homolog YKT6-like [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

EGACTEQ4350025312-PA

TCCAAAAATAGAAAGAGGGTTTTTACTTATATGATCgacaaaaagaaatttaaaaattaggTTTTCAAGTTAAGGAACGTTTAAAAATGAAGTTATTTGCCTTGTGTATCTTTCATAAGGATGTCAATGTCAAACTTCTAGTATCAGCCTTCGATCTTCAGTCGTTTGGATATTTTCAGCGATCAAGTGTAAAAGAGTTTATGCAGTTTACAAGCAAGATTCTTGTGGAACGAACAAGACCAAATGAACGAGCTACAGTAAAAGAACAAGAATACCTGTGTCATGTATATGTAAGGATGGACTCACTTGGTGCATGCCTGATTGCTGATGGTGAATACCCACGGAGAGTTGCTTTCACATTTCTTAACAAGATACTTgaggaattttcaaaaacagTTCCACAGTCAGTATGGAGATCAGCGGCTCATGACTCTGTTGAATTTCCTGCATGTGCAGAAAATCTTGAAAAGTATCAGAACCCTAGAGAAGCAGATGCAATGTCTAAAGTTCAGTCAGAACTAGATGAAACCAAAATTGTTTTACATAGCACCATTGAAGCAGTATTAGAAAGAGGAGAAAAACTGGACGATTTGGTAGAAAAATCTGAAGGTCTTAGTATGCAATCCAAGACATTCTACAAAACAgcAAAGAAGACAAACTCTTGTTGCTCTATTCAATGATCCACTTTACAATCCCAGGGCTGCAGAACTACTGGAACAAGTTGATCCATAAGCATTGCAGTTTTCTGCAGCACTGAATTTGACCCAGAAAAATGCAGAAGTTACAAAAATTATATAATGAGAAAATAGCTTTCAGAAATATTAAGTAATGCAAAATCAGTTTATTTCAcggaaatacatttttttaattgcgCATTTCAAATTTAAGAATACTAGAATGAAGTGGCCATTTAAAGTCAGTCCAAAGACCTCTGAACAAGTTATTCAGTTCTTGCAGACATTGTTAGGAAATAAGCCAGAACCCGAGAAATAATAATATGTCTGTCAAAAAGTGCTGAAATTGTGACATCTTGGTTGCCAATGGAAAGGTTATTCCACAGGTATCccgattttttaaaagaaagcaTAGCAATCAGTGTCAACATTTTGACAACCAAATATAAAATCAACCTTGTGCTGGGTTGCAGAACGCTTTCGTACACTGTAAATTATAGTATGCCTTATTTTTTTATCAGTTGTGTAAGTTTCATTTGCTGAGTTTTTCAGTCTAGTTAGAAATGTGGAGGTCACGTGACAATATTCCGTCATGTTTGGTGTATGAAAATGCTTTAAGGAGACCGAATATAATGGCGGTAATTATCCAATGACCTGTTGATGCAAATAGTCGATTCTTAAATGAAATCAAACACATACTCTGTATTAAATAAGGAGATCATTAACTCAATTACCTTTTCTCTGGATTCAGTCGTCTAAAAGTTTCAGGGGATGTTGAAGTCCTTTTACACTGTATACTTTTCTCAGCAACCTGTCTCGCAATGCTTGAAATTTAGCGTTTAAATGTTGCCGAGGTGAGGTAATAGACCGCAACTCGATCTCATCAACTTGCAACATTTTTTTGTCTCCGGCAAAAATGAGAAATGCGCGCATGCGCTCTTGAAAATATGCCTTAAAATTGCGAGAAATGTTTTAGGGTGAGCGCATGCGAATTATTAGTGGGTATGTAGTGCAGTTTTGAAGCTGcgtgcatgcaatgttgcatatAGCGAGGCTACAATTTCCAGGTCTCCCCTCCCTTGACCTATTAATggctttgttttaaaatttcacCTCTTTTCATAACATTGTAAATGCTTTTGAACATATTCATATGAAAAGGAGCGCCAAATAAATCAACAATCAATTCAGTCAATAAGTGTTCCTGCTGCATCTGTTTGACACACGACCGCGGCAATGGGAGCGCTTTTTTTActctctccacaaaaatcaacttctaaattctaatttgatctaccGGCTGCCTGGCTTATCAATTGGGTCGTAAGGCCTGTTAggcacccaggagtggtaagcGCATTAAATTTTATAGCGCAACACATTTCATGAATATAAACTGTAAATACTTTACTGGAATACGAAACTCACCATAAGTAAACAagaagtagtaataaattatgcgttcggtgtgtatacaatgaagtagagagaataagag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUN8	Synaptobrevin homolog YKT6 OS=Danio rerio OX=7955 GN=ykt6 PE=2 SV=1
Q9CQW1	Synaptobrevin homolog YKT6 OS=Mus musculus OX=10090 GN=Ykt6 PE=1 SV=1
Q3T000	Synaptobrevin homolog YKT6 OS=Bos taurus OX=9913 GN=YKT6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005983 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF13774 all species →	Longin	Regulated-SNARE-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010908 all species →	Domain	Longin domain	Interproscan
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR001388 all species →	Family	Synaptobrevin-like	Interproscan
IPR045848 all species →	Domain	YKT6, SNARE motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45806 all species →	SYNAPTOBREVIN HOMOLOG YKT6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08516	YKT6; synaptobrevin homolog YKT6	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.