Gene detail

Detailed information of EGACTEQ4350025965-PA in Actinia equina

Genomic Location: WHPX01000910.1:178618...214272
NR annotation: XP_031567521.1, transient receptor potential cation channel subfamily A member 1-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350025965-PA

ATGGGTAAAAAGGacacgaagaagaagaaagaaaaagacgtTCCTCTTGTGATTGTAAATGATGCGAACAAAGAGAAGGATTTTCAGGATGAAGATGATGCAGAAGATAAAGTAGAAGAAAAGCCGCAAGAAATCAAAAAACAAGGAACCAAGCAAGAGCAGCTATGCTCTGCGGCCTATACAGGCGATAAAGAAGGAGTAGAGAAACTACTTGATAAAGGAGTCGATATCAACTACCGTGATGAGTATGGCAAATCACCTCTTCACCATGCCACCTCGGGCAAGCATCACAATATTGTTGAGTTGTTACTTGGTCGAGGCGCTGACGTCACTCTTCAAGACCAACGTGGTGATACACCTTTGCACGCGGCAGTGAGAGCTGGTGACGAGTCTTCTGTCAAGTGTTTACTCACCCAAGAACGATGTAACGTCAGTGCTGAAGGAAGAGGACTGTGTTCGCCTTTGCATATTGCTTGTGGTATGGACAGACTTGCCATCAGCAAAGTATTGGTTGAACACAACGCATCGATAGATTGTAAGGATGAGGACCAAATGACACCGTTGGGTCACGCGGTCGAAAAAGGAGCCAAAACTACCGCTGCTTACTTGTTTAGAATTGCCAAATCAAAGCTTGGTAGTGCAGAATCGCTTCTGTACAATGCGGACTCCGAAGGAAGCACCCTTCTCCACATGGCTGTGGACAGCGGTATTACCGAAATTGTTGAATTGTGCCTAAGCAACGGAGCAAGAGTGCGAGAACCAAAGAGAACTGACAAGACAACAGCGTTCCATCTTGCGTGTTCTCAAGGTCCTGTGGAGATGGTGCGCCTGCTGACGAAAGAAGACCCTGCCATCTGCCGCATTTGTTTGATTGACAAGGGAGGTATGTCTGGCCTTCATCGGGCGGCCACTAACAACCAGAGAGACATTGTTGAATTTCTCCTTGATCAGGGTGCTTCAGTTGATCTTCCAGACAAAGCACGCCGAACCCCGCTCTTTATGGCAGCGTCAAGTGGAGCGACAGAGACTGTGGAGCTCTTGATAAAGCGTGGCGCCAATATTACAGCGAAGAACCTGGCAATAAAGTCTGTACTACATAGTGCTGTGGGACACGATAATACCATCGATGCTATACTCAAAAGTCCTGCAGCATCGTATCTCATCTCTGAGAAAGACAAGAATGGATTCGCTCCAATTCATCAGGCAGCGATGGGAGGACATCTACAGaatattcatttgttcatgACCAAAAACAAAGCTGCAGCAGGAATTACATCTGATTCGTTGGACACACCCCTCCACGTGGCCTGTAGGTATGGATGGCTGGAAATCGTTAAAGACCTTTTGGTCGGTCGTAATGTTCGGATGATAAACCTGCAGAATAATCAGGGCAAGACTCCGCTTCATTTTGCTGCAGGAGAAGGCCATGAGAAAGTCGTGGAGTTACTCATAGGAAGAGGAGCAACAGTTGAACGTGATGAGTTAGAGCGAACCCCTTTGCACTTGGCTGCAATCAATGGTAGCAGCAGATGCGTTGACTGTATTCTTAGCAAACATCCAGACTGCCTTAACTTTGTGGATGATGATCAGAATACAGCACTAAACCTGGCTGCCCTTCATGGACACGAAGAACTGGTAGAAGACTTGCTGTCCAGGAGTAACCAACAAATCCTGATGAAcaatttcaatcaaaatgcttTAGATATCGCCATTAGGATGGAAAAGAAAGATGTTGCTATGACAATAGCTGATCATGACAGATGGAGGGAGCTTATGAATACATCCTCTCCTGGAGGACTGGGGCAGATGAAGGTGCTGCTGATCAAAATGCCTGATGTCGCGGAGCGTATCCTAGACCGTTGTGTAATCAAGGAAGGAGATCCCATCAAACAGGATTATAAgATCACATATGACTTCAGTTTTATTCAGGGAAAAATTAACTCCAAACAAGACCCTTTGGGAGTCTTAAGGACCATGGCAGCAAAGCGCCGTGACAAGTGTATGGTTCATCAGGTCATTTTTAAGTTAATGAACAGGAAATGgttccccaaaaagaaggaaactaaggtctataaagcttcaccattgacagaattagttcatgaaaaCTCCGTTTGGTTgatggacgcggagggaagtcagtttatgacccaagatggtactttataccgccccgaaattgaacatctacgcatccagagcgcctgtgaaaccttaggggaagacttctcagacgaggtccttagccctcgtagtttggacttcttagccgcaaagaagaggaacggatggaagtccacgcctaaggaattcgccgacatagccaaagcctgcgtagaacacggtcatggaggtctgtggaacatggagtatgacgaaaacgaatacgtctccttagacatgaaacactgttaccctgcaagttttaaaggattgggggattgtaaggaatattacgaccgttacggacatccagattcacagttctttcgtgttgcgttggatggtcactacgacgccccagcaacgggattcgtacggttaaccagctggaaatttacaaaagacttacatccaataatttacgcgtggtacgggaagcacttacaggaaaaggaatggattcccataccccttttgaaattcctcgaagagcgcaaacttttaaaatacacagcgcatgaagccatactttgtcacagcgcctttacgcaatggttaccggagcataaccccacagcgcgtgtggtcataggtaaattcacgcagggcgctaaggagggtgaaaaacatatgcagcgacgcctaataacggacgaaggagagttaagcttccttataaagcgcgcgcatgatgaaggaacaatggtatccgtggagaaatgggattaccttgtagatgataaactacacaaatggaatgcgctgtgttattaccaagaccatcgaccgcagtattatcatctgcgtgccagcatgctcgcatatgcgcacattaacctccttgcaatgttactgcggtttgacaaagaggatgttccgcgcgtagctacggattccttgtatAACGAAGTCGTTATGTGTCAATTCAACGAGTCAAATCCAAAGCTGGAACATGACCAAAGTGAATTGATCTACTCACTACAAGATCAGACCTCACTTTACCTTCATTACTGTGTTATCGCCATGACGGCTTTTCATGCTCTGCGAGAGTTTCTCCAGATGTATAACAATCGTCTGTTGTACTTCACATCGTTATCTAACTATCTCGAATGGACTGGGTACATCTTTACATTCCTTTACGTCATCCCCCCGTATGACTGCAAGTGGGGTATCCATCAGCGGTTTGGTGCTATCTCCTTGTTTTTTAGTTGGACCAATCTCATTCTGTACTTTCGCAAGTTGTCATTCTATGGTCAGTATGTTATCATGCTGTCAACCATGTTTGTGACGCTGTTTAAGGTATTGATgctgtttttcttgtttgtgaTGGCGTTTGGGACGACGTTCTATCTTCTTTTGGATAATGTTGATTCATTTCTACGGCTCGAGTACTCCTTGATGACGATGTTCGTCATGACTCTTGGCGAGATGAACTACGCTGATACTTTTATGCCATGGAAAAAccttccccaccccaccctGACAAACATCTTGTTTCTCGTGTTCGCTCTGGGGATGCCTATTATTCTTATGAATATGTTGGTTGGTCTTGCTGTTGGTGATATCGATGGTATCATGAAGAACGCAGCAATGGATCGATATGTCACGCAGATCGATATGTTGCTTGATACAGAAGACACGTTGCCACTACGAATCCGAAGAGGCCTGAAATTTGACAAAGTTGAAGAATATCCTAACAGGAAGCTTTCTTTGAAAACGAAGGTAAGTGGGTTGTAA

Transcript

EGACTEQ4350025965-PA

Protein

Uniprot

Uniprot term	Description
Q7Z020	Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster OX=7227 GN=TrpA1 PE=1 SV=4
Q8BLA8	Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus OX=10090 GN=Trpa1 PE=1 SV=1
O75762	Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens OX=9606 GN=TRPA1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052076	Family	Transient receptor potential cation channel	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47143	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04984	TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1	-	Ion channels	ko04040	deepkoala