Gene detail

Detailed information of EGACTEQ4350029933-PA in Actinia equina

Genomic Location: WHPX01001398.1:498011...510160
NR annotation: XP_031552801.1, proline-, glutamic acid- and leucine-rich protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350029933-PA

atggcggctgatACAGCTGTGGTTGTTGGTTCGTATTTAAACGACAATAACAAGACAGATAAGCACATTTTTACACTCTTAAAATGCGTAAAAGAAAATCAGTGTCTTCTAGAATATGAGTCTAGTAAGGATTGGACTGCAAAAGCAAACAGCTTTTTAAATTCAAAGACAGAAAGATGGCTAGGTATCAGCTTACTGGCAACCATTATACCACAGTGTGACACAGAGACTTTTACAATTAACTGTATAACATGGATAAAAGCTATAGTGCAGGTTATCCAGTCTTCTTCAGCTTCATCAAGTTTGATCCAATGTTCTGTGAGGGTTATGGATGATTTGATGAAATATGCTATACAGTTTCCAGATATATCGAGAACGATTGCAAATTCTGTCATGCCATCATTGATCTCGGCACTTTTATCTCGAAAAGACAAGGACGTTGATAGTATATTATCTGGTATTTGTACATGTGTAAGGTATATGCCAGGACCTGTAGCACCATTCAAGGTTCAAATAGAGAACTACATTATTTCTTGTCTGGATTCCTGGAACACAAAAATTAGAAAGAATACTTGCCTGTGTTTTGCTCTTCTTGCTGGCTGCAGCAGCAATACAACATCAACTGACAAATACAAAACTAACTGGGAATGCCAGTGGAATAGAGTTTTGGCCACAATAAACCATGCTTTGAATAATCTGTATGAGAATGTTGAAATGTCAAACAACCAACTAAATGATACCTTTCTTGGAAAGACAGAGACATTGGCAGTGAGTAATATAACTGATGCAGAACCTGAGAGAACCAACATATTGACTGCCAGACTGATCTCATTGTTGGATTGTCTCAACATCATGACAAGAGAGGGAACTCGTAGAATTTCCATGATACCAATAGAAGAAACTCTTCTACTAATTGAACGAATTGTTGCAGTGAATGGAAATATGCTTAAAAGTGTGTCAGTTGACATAGTTCTTTTAAAGACCTGCTTATCTGTCATACATGAGAGTGCTATTAGACTGCTTAACTCATTATTACTAAGaTGCGGAAGTCTTCTCTTGCCAAAGAACCACCAGATATCAAATGTGCTGATAAGAGAGCTATCGTGGACATTAAATGACAAGTCACAAGATAAAAGACATGACGGACACAAACCTTATAGtAATCTTAGATGCATTTTGTTCAAGTGTTTCATCAACTGGTGCCATCTGAAGGCCAGCATCAGTACAGATATTATAAAGAAGGTTATCCATAATATCTTGTCTGACATCAGTCCACAGACCAAACAAACTAAGcTTATGAATCCAGATAACCATAAACAGCCAAAATCTTCCCATAAGGCAAAAAAGCGAAAGCTTCAAGAAATGGAACAGCTAAGCACAAGTCAAAAGAAAGAGAACCCTATCGacaatctgtctgtctgtcatgcTGCACTATCTGctCTATATGCAATTTTAATGAATGGTGTGGCCAATATTACCAAAGAGTTATATCAGGAGATGCAAGGGGTGTTGCTAAACCTTATTCTACAATGCCAAGTATCTGTACCTGGAAGGATGCCATCACCTTTTTCCGATGCAGACTGTCGTAAATCTCTTTATCAATGTCTGCTGGCATGTGTTGTAGCTTGTCCACCACAAGCACCAACTTCCATTCAGTGTGCCATAAGATGCTGTACAAGGGGCTTACAAGATACACACCCCAAGGTGTCAAGCTACTGCCGAGAAGCATTAACCATATTGACTGCCATTATACACCCTTTAGTACCTTCTCTTGAGAGTGCAACACAGTTTATGATGCTTCCAACAAACAGCAAAACATGTGTAGACCAAGATAAAGATAAACACCAAGAAACAAATGCCCTATCTGCTGAAACATCTGTGGTTAACCAGAATGGCTCAGAAGTACCAGCTCATAATAGCAGTAGGTTGTTAGAGGGCACAGTTTTGGACGTGCCAGTAGGTGTATGTGAAAGTATGCAGGCATCATCCAATACCTACACAAAAACCCAACCTAGAGAGAATGAAGAATTGCAGATCAacactgataataataatacagataatcaacaaattaatatatttagaaACACTCTTTCAAATCAAGACCCAATGGACACAAGAGAATCAATAAACACACAAGCCATTGAATGCACAAAACACTCAGATATTTACTCCTCTTCAAAACATCAGTCAAAATCTGATGTATTGACCAAAGACAATGTGGATATTGCTGCTTCTGGGGCATCAAAAAGTGATGTTTTCGAGTCAGATTTGCAAGAACACACCAACATCAGCCTACCATTGACAGATACTTTAGGTGCTGAAAGCAATGAGTTGATTCCGGCTAAAATACAGAAGCTTGATGCAGGGGAACATATTGTCATGCAAAAAGATGAAGAGATACACAAGGGAAAGACTAGTATTGGGAATGCTAAGACAGATGAGGATATGGGTGATGTAGACGAAATGCTTGCCACGTTTGTAAATACTTCTCCTGATTCAGACAGTGAATAA

Transcript

EGACTEQ4350029933-PA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala