Gene detail

Detailed information of EGACTEQ4350030278-PA in Actinia equina

Genomic Location: WHPX01001398.1:44090...52301
NR annotation: XP_031557268.1, ribosome biogenesis protein BMS1 homolog [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350030278-PA

atggcggacgaagagAATGTCGCAGGAAAAGCTCACAGACCCAAGCAATCGGGTCCAAAAGCcgtgaagaaaaagaagaaggatgAAGGAAAAGAAGACAAGACAGACTCGCGACGAAACGCAAAGGCATTTACATTTCATTCAGTCGTAAAAGCGGCAAAACAGTTTCGGCGTGCGAAAGACATTGAAACCAAGAAGCATCATGTTCCTGTAGTAGACAGGACTCCTCTTGAGCCTCCTCCGATTATCGTGGCTATAGTTGGTCCCCCAAAGGTGGGAAAAACAACTCTTATTAACTCGTTGTTAAAGAACTTTACGCGACAAAACCTTTCTAACATTGAAGGTCCTGTGACGCTTGTATCAGgaaagaaaagaaggctAACCTTTATTGAATGTGGCAATGATATTAATTCAATGATTGACATTGCAAAAGTAGCTGATTTGGTTCTTCTCTTGATTGATGCCAGTTTTGGGTTTGAAATGGAGGTGTTTGAGTTTCTTAACATCTGTCAAGTACATGGATTCCCTAAGATCATGGGTGTACTCACTCATTTAGACATGTTAAAGAACAACAAGTCACTGAAGAAGATTAAAAAGAGGTTAAAAGACCGCTTTTGGACTGAAGTATACCAGGGTGCtaagcttttttatctttctgGTTTGGTTCATGGCTCATACCCTAAAGTAGAAGTTCATAATCTTGGTAGATTTATTTCTGTGATGAAGTTTAGACCACTGACTTGGAGAACCTCCCATCCATATATACTTGCTGACAGGATGGAAGATCTGACTGATCCAGAGAGTGTTcgtcaaaattcaaaatgtgaCAGAAGGGTGTCTTTATATGGATATGTGCGTGGAGCTCACTTGAAGTACAATTCCAAGGTTCATCTTTTAGGCTGTGGAGACTTTAAATTAGATGATGTGAGTCTACTCAAAGATCCATGTCCATTACcagacaaagaaaagaaaagaagtctTAATGAGAGGGAGAGAATGGTTTATGCCCCAATGTCTGGTGTTGGAGGTATAGTCTATGACAAGGATGCTGTATATATTGATCTCGGTGGAAGTCACTCAGCAAGAAATCAAGCTGAACTCAGAACAGAAGAAGAACAGGATGACAACAGGGCTGGTAATGAACTAGTTTCATCTCTAATAGATACAAAGCATACCTTGGACAGCAAGATGGCCTCAAGTCAGATGACTTTATTCAAGGATGGAACATCAGTCTCCATGGAGGAGGTGGAAGAaACAAATGGAAAACCATCTCAACGATTAGTCCAAAGTGAAGATGGGCGCATCAGACGGAAGGCAGTATTTGAAGATGATAAAGATGAGAATGAAAGTGACTtgagtgacgatgatgatgatgatcaagaagaagaacaagaagatgaACTTGAAGATAATGAAAATGTAGAAGAAGAGGACCATGAAGACGAGgacaatgatgaagaagaggagAATGACAACAACGATGAAGATGGTGGTACCAGTGGAAGTGACATTGATGACAATAGTTTCggaatttttcaaaacaaaacaaagaaaggattaaaaagaaaactaatgAATGAAGATGAGTATGACTCAGATCAAAGTGAAGTGGAAGAAGACACAATAGAATATGACATTAAACCTAAacagaaacaaaacaataaaagaaaggaaaatggaATTGAAAGTATTGatgtgaaagaaaagaaacagaaagGGAAAATGAAAGAGAAGTTGGAATCTAGTGGAGGATTAGAAACAGAACTAAAAaatagacaagaaaagaaaaaagaaaaacaaaagaaatccaaaaatgATAAATCTTCAGGAAAGGATAAATCTTCAAATAAGGACACTATGGATGTGGATGATGGTGAAATTagcttcaaaagaaaacaaactaaaaatgtAGAGTTAGAAAGTGAATCTTCTGAGGACAGTAacgatgatgatagtgaagatgatgattatgatattgatgatgatgaagatgctaTTCATAATGaaagcgatgatgatgatggtggtgatggtggatATTCTAGTGATTCTGATCAAGAAATGCAAGATGCTACCTTGGACAGTGTAGTGGATTTTCCTACAGATGTTGAAAGAGGTGAACTTAAGTGGAAAGAGAATCTTCTTCAGAAGGCTAGTGAACTGTTCTACAAACACCAGCTGACAACACCCAACCTGTGCAAGCTGGTCTATGGCAAGAttATCAAAGAAACAACAAAAGAGGACCATAGTGAGAGTGACGATGAACAGAGAGTTGGTgggttttttaaagtaaaatcaaAGCATCAAAAGACCGATGACATCATGCACCAGAGAGATTGCTCTTTGGAGCCTGATCTATCTGGGATGGACTGGGACTTAGAGGAAGTTCATGAGAGTATCAAGGACTGTTTCGTGACGGGAAAGTGGAATGAAGATGAGGATGCTGAAAAACTGCTCAATCAGGATGATGAATTATCAGATGATGAGATATTTGGGGATTTTGAAGACCTGGAAACAGGAGAGTCCCATACCACATCAGATCGTAAGAGTACTGGAGATAAGAAACCTGATGCGGATGAGGAAGAAAACAGTGAAGACAACCaacagaaggaagaagaaaaggaagaatcaagaatagaaaagaaaaaaaagctgaaGGCAGCATTCAATGCACAGTATCCTTTTGACTGA

Transcript

EGACTEQ4350030278-PA

Protein

Uniprot

Uniprot term	Description
Q14692	Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens OX=9606 GN=BMS1 PE=1 SV=1
O94653	Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bms1 PE=1 SV=2
Q08965	Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BMS1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF08142	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR012948	Domain	AARP2CN	Interproscan
IPR030387	Domain	Bms1/Tsr1-type G domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039761	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan
IPR037875	Domain	Ribosome biogenesis protein Bms1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14569	BMS1; ribosome biogenesis protein BMS1	-	Ribosome biogenesis	ko03009	deepkoala