Gene detail

Detailed information of EGACTEQ4350032219-PA in Actinia equina

Genomic Location: WHPX01000028.1:132809...140096
NR annotation: XP_031567449.1, recQ-mediated genome instability protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350032219-PA

atggcggcataCAGTGAGGAGCAGTGCTTAAAATGgttgaaagaaaaatgttatGTAAACGTAAGGAAAGAATGGCTGGACGCTTGTATTGAGTTCTTGAAGCAGGAACATAGGATAAATTCCTTAATGGATGTTGGCCAGTCTGCTTATTCTCAGATACAGAAAATAAAAGGCCAAGATGATCTGGAAAACCAAAAAGAGAACACAAGCAACAATTGGGAGCCAAAGATCAAACCTAGTCGTATGCTGTTCCTTCACATGACAGACGGGTCAAAGAGTATCCAGGCAATGGAATATCAATCAATTCCTTGTCTAAACCAGTCTACAGCACCTGGAACAAAGTTGCAAATCCAGGGGCCTGTTTCATGTCGGCTTGGGGTATTATTACTGGCTTCCAAAAATGTACATATCCTTGGAGGTTCAGTGGAGGAACTAATGGAAGCAAACCCAATGTGGAAAGTTTTGCATAATGCCATTGGCCAAGCTGCTCCTGAGCTGCCAACATGTTCTAGTAATATCAAAGAGACTGCAGATGACCGAGACAACACTCATCCCTTCTTGCATACAGATGTCAATGGTAATAACATGCATAGCCAAAGCCAGTTAGGATCAAGAAATAATGCATACCAGCAGCCCTATGTATCCAATAGTGGGTCTGTGTTACGATCTGGAGACAAAAGGAGATCTTCCAACTCAGGTCAAAGAGAAAAGATTAATCACTCATCAAGAGGAAAAACTGGCGTGCAACATTATTCCAACAAAAGACCTTTCTCGTCATGTAGTAACAGAGGGATGAGAAATAAGAATAACAATGATGTTGAAGGTATGTTTGATGGTGAAGATCTCTTTGATGATAATGGAGATGAGAATTTTGATCTTGATCAGCTTGATCGGATTGAAAAAGAAGTCATAGAAAACAATGCCTTTGATGACAATATTGATGAGAATTTTGATCTTGATCAGATTGACCAGATTGAACAAGAAGTCATAGACAACAATGTCTTTGATGACAATATTGATGAGAATTTTGATCTTGATCAGATTGACCAGATTGAACAGGAAGTCATACAAAACAATGACCATAAGGCTAACAGAAAACCTGATCAAAGAGTTAATTCTTCTCACACACAGAATGAATTGTTGGAGGAGGATTTTATGGACGATGATTTTGATCTTGATGATTTTGATATGGATCAGTCAAGAGTTTCTTTTTCTAAGATAGATTCTGGACACAAGAAGTCTAGAGAGGCTGTCAAAACTGAGaatattgaaaaacaaagaaagactGAGAAAAACTGTCTGCCGATggccaaaaaattgaaaacagcAACGAGTAGACCTGAGACAAAGAAAATTACTTCTACGGCTTGTGTTTTTACTGAGAGAAGAAATGATGCAACAGAACGTGGTGGTAGGAGTCTTATAAAGAATGGAACCAACCAACCACTTTTAAATTTTGATACCCAAAAATCTTTGTCCAGTAgaatcaagaaaaaagaaagaaatagtgaaGTTGTGGACCTTGTGGGACCAAAGAGTATTAGTTCGTTATCAATAAAGGTTAAAACTGAAAGTAGGGATGAAATGTCAATTGATAACCACAGCTTTGCATTTGATGATACTGCCAATAGAGAGAGTACATCTTCTATGGAGTGTGAAATCAGAAGTGAAATGGGAagtaaaatgggaaaaaaacctATTGAAAAATTTGGGATGAAAAAGTCTACCCAAATTCCACAACAAACTACAATACAATTCAACATACTGCAACCTTCACCCTACACATTTGTGAAGAAGGAATGCATTGAAGTTGTTGATTTAGTTGATGAGGAAGACAAAGATGTTCCAGTGGCAGTAACCAGTGAAGAACCAGAGACGTTACTGCCATTTACCTACCTGTCACAGGTTCTTAAAGATCAGCCATTTTTCGAAGAGAGGACCTTTAGAATTAAGGGATATATATCCACATTAGTTTCTCACACTCAAGTGTCTGACGTAAGTCAGAGATGGAAGGTGATTGTTAAAGTCAATGATGGATCAGCGAGTATTGATGCTGCATTAGGAGAGGAGGTGTTGACAGAGTTGTTGGGCACTCCATTAGAATCATTTCAGTATACCATGATTGAAGCAAAAAAGAATCGCGATCCAATCAAATGCCAAGCTCTACAACAGCAAACAGTTCAATTCCAAAAGAAACTTAGTCAGATCTCTTGTCTTATGGATGTACACTTCTCTCCATCTGAATCCAATCCTCTAATTATACGTCTAACTGAGGCATCTCGGGATGACATACTGGGTCTTATTTCACGGCTCGCTGGGTGTAGATAA

Transcript

EGACTEQ4350032219-PA

TGGAAGAgggaatttcaaaatggcggcataCAGTGAGGAGCAGTGCTTAAAATGgttgaaagaaaaatgttatGTAAACGTAAGGAAAGAATGGCTGGACGCTTGTATTGAGTTCTTGAAGCAGGAACATAGGATAAATTCCTTAATGGATGTTGGCCAGTCTGCTTATTCTCAGATACAGAAAATAAAAGGCCAAGATGATCTGGAAAACCAAAAAGAGAACACAAGCAACAATTGGGAGCCAAAGATCAAACCTAGTCGTATGCTGTTCCTTCACATGACAGACGGGTCAAAGAGTATCCAGGCAATGGAATATCAATCAATTCCTTGTCTAAACCAGTCTACAGCACCTGGAACAAAGTTGCAAATCCAGGGGCCTGTTTCATGTCGGCTTGGGGTATTATTACTGGCTTCCAAAAATGTACATATCCTTGGAGGTTCAGTGGAGGAACTAATGGAAGCAAACCCAATGTGGAAAGTTTTGCATAATGCCATTGGCCAAGCTGCTCCTGAGCTGCCAACATGTTCTAGTAATATCAAAGAGACTGCAGATGACCGAGACAACACTCATCCCTTCTTGCATACAGATGTCAATGGTAATAACATGCATAGCCAAAGCCAGTTAGGATCAAGAAATAATGCATACCAGCAGCCCTATGTATCCAATAGTGGGTCTGTGTTACGATCTGGAGACAAAAGGAGATCTTCCAACTCAGGTCAAAGAGAAAAGATTAATCACTCATCAAGAGGAAAAACTGGCGTGCAACATTATTCCAACAAAAGACCTTTCTCGTCATGTAGTAACAGAGGGATGAGAAATAAGAATAACAATGATGTTGAAGGTATGTTTGATGGTGAAGATCTCTTTGATGATAATGGAGATGAGAATTTTGATCTTGATCAGCTTGATCGGATTGAAAAAGAAGTCATAGAAAACAATGCCTTTGATGACAATATTGATGAGAATTTTGATCTTGATCAGATTGACCAGATTGAACAAGAAGTCATAGACAACAATGTCTTTGATGACAATATTGATGAGAATTTTGATCTTGATCAGATTGACCAGATTGAACAGGAAGTCATACAAAACAATGACCATAAGGCTAACAGAAAACCTGATCAAAGAGTTAATTCTTCTCACACACAGAATGAATTGTTGGAGGAGGATTTTATGGACGATGATTTTGATCTTGATGATTTTGATATGGATCAGTCAAGAGTTTCTTTTTCTAAGATAGATTCTGGACACAAGAAGTCTAGAGAGGCTGTCAAAACTGAGaatattgaaaaacaaagaaagactGAGAAAAACTGTCTGCCGATggccaaaaaattgaaaacagcAACGAGTAGACCTGAGACAAAGAAAATTACTTCTACGGCTTGTGTTTTTACTGAGAGAAGAAATGATGCAACAGAACGTGGTGGTAGGAGTCTTATAAAGAATGGAACCAACCAACCACTTTTAAATTTTGATACCCAAAAATCTTTGTCCAGTAgaatcaagaaaaaagaaagaaatagtgaaGTTGTGGACCTTGTGGGACCAAAGAGTATTAGTTCGTTATCAATAAAGGTTAAAACTGAAAGTAGGGATGAAATGTCAATTGATAACCACAGCTTTGCATTTGATGATACTGCCAATAGAGAGAGTACATCTTCTATGGAGTGTGAAATCAGAAGTGAAATGGGAagtaaaatgggaaaaaaacctATTGAAAAATTTGGGATGAAAAAGTCTACCCAAATTCCACAACAAACTACAATACAATTCAACATACTGCAACCTTCACCCTACACATTTGTGAAGAAGGAATGCATTGAAGTTGTTGATTTAGTTGATGAGGAAGACAAAGATGTTCCAGTGGCAGTAACCAGTGAAGAACCAGAGACGTTACTGCCATTTACCTACCTGTCACAGGTTCTTAAAGATCAGCCATTTTTCGAAGAGAGGACCTTTAGAATTAAGGGATATATATCCACATTAGTTTCTCACACTCAAGTGTCTGACGTAAGTCAGAGATGGAAGGTGATTGTTAAAGTCAATGATGGATCAGCGAGTATTGATGCTGCATTAGGAGAGGAGGTGTTGACAGAGTTGTTGGGCACTCCATTAGAATCATTTCAGTATACCATGATTGAAGCAAAAAAGAATCGCGATCCAATCAAATGCCAAGCTCTACAACAGCAAACAGTTCAATTCCAAAAGAAACTTAGTCAGATCTCTTGTCTTATGGATGTACACTTCTCTCCATCTGAATCCAATCCTCTAATTATACGTCTAACTGAGGCATCTCGGGATGACATACTGGGTCTTATTTCACGGCTCGCTGGGTGTAGATAAGTAGCAACAATATGATACTTAATGCTGGTATTTTTTGTGGGTCATTTATACAATGAAAACTGTTGTTGGTTAATGCACAGCACCTTGGTAAAACATAAACAATTAAAAGCTTATTTTGTTTAGAAAATAAGGCTTAATATTTTCTTCAGCTTActccttttctcttttttcttctgctCTTTTTCATCCTCTTCCTTCTCTGAGCTGATTAGGGAATCAAGGACAGCATAGGGTAGTGTAGTGCAatcacctctcacctctaggatctcagg

Protein

Uniprot

Uniprot term	Description
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1
Q7ZVM9	RecQ-mediated genome instability protein 1 OS=Danio rerio OX=7955 GN=rmi1 PE=2 SV=1
A4IF98	RecQ-mediated genome instability protein 1 OS=Bos taurus OX=9913 GN=RMI1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013894	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR042470	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala