Gene detail

Detailed information of EGACTEQ4350032407-PA in Actinia equina

Genomic Location: WHPX01000627.1:117172...130902
NR annotation: XP_031562194.1, choline dehydrogenase, mitochondrial-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350032407-PA

atggcgcGAGGAGGAACGGAGTTGTTCGTGGGAAGACTATCTAAAGAAACTAAGCAAAGAGACCTTGAAAACGTCTTTTACCTTTACGGCAAGCTTTCTAGATGCGATATCAAATACGGAAGAGAAAGGGcTTATGGATTTATTGAGTATGAAGATCCCAGAGATGCTGAGGAAGCCTTGAGAAGAGAAAATAACAGAAAACTCTTTGGATCCAGAATCGTTGTTGAGTACGTGAAAGGTAAAGAACGAGGAGGTCCGGCTGGTGATGAATGCTTCAAGTGTGGAAGACTAGGGCACTGGGCAAGCAGCTGTACAGTATCAAGAGACGATACAGATGGTTTTCGGGGCTCTGGAAGGCATGCCAGACCCTCACCAGCAATACTTTTGAAGCGACCACCGCCAAGCCGCTATAGATCTCGCTCAAGATCACCAAGAAGATTCCCTAACCCTCCTCCTCGAAGGCGCCGCTCTTTAAGCCCCCCAAGAAGGCCACGCCCTCCACCCATTAGCCGCAGCAGGGATAGATTGCACAATGGAAGCCGCTCAATTGCCGATAAATTAATTTtgagaaatattatttataaaggtGTCATTCATCCTCATTCAAATACTCGCAACTCAATAACAACCTTCTCTTCTACTCATGATTACGTCATCTGCGGTGCTGGCTCAGCAGGATGTGTTTTAGCCAATCGTCTTTCAGCAGATCCAAACAACAACGTACTACTGCTAGAGGCAGGACCAAGGGACTGGACTTGGAAGATTCACATGCCTGCCGCTCTGATCTATAATCTTTGTAATGACAAGTACAACTGGTTTTACCATACAGTACCACAAAAAAACTTGAATAATAGGGTAATGTATTGCCCAAGGGGGAGAGTGTGGGGAGGTTCGTCTTCCTTAAATGCCATGGTATATATCAGAGGACATGCATATGACTATGATAGATGGGAAAGTGAAGGAGCTAAAGGCTGGTCGTATGCTGACTGTCTGCCATACTTTAAGAAGGCACAGACTCATGAACTAGGTGCTGATGAATACCGTGGTGGCGATGGACCTCTACACGTATCCAgaggaaaaacaaacaatccaTTATTCAGCGCATTTCTTCAAGCAGGACAAGAAGCTGGTTATCCGTTCACAGAAGACATGAATGGTTATCAACAGGAAGGacttggatggatggatatgacTATATATAAAGGAATGAGGTGGAACACAGCAAATGCTTACCTTAGACCCATTAAACGGAAGAGGAGGCGACACCTGAGAACAGAGACCAGAGCATTCATCACTAAGATActgtttgaaggcaacagagcTGTTGGCGTAGAATATCATAAGGATAACCAAATAAGAAGAGCAAGAGCAAACAAGGAGGTGATCCTATCTGGCGGAGCAATCAACTCACCTCAGCTCCTGATGCTGTCTGggattggtgatggtgatgaactaaaaaaacatgggatccctgtggtttgtCACCTACCAGGAGTGGGACAAAACCTTCAGGATCACCTCGAGATGTACATACAACAGGCGTGTAAGAAGCCAGTCACTCTCTATAGTGCTCAGAAATTATGGAATATGATACCCATTGGCATGAAATGGTTTGCAACAAGGACAGGTCTTGGAGCCACAGCACATCTTGAAGTAGGAGGGTTCATTAGGAGCAAGGAGGGTGTTCCTCATCCAAACATACAGTTCCATTTCTTGCCATCTGGAATAATAGACCATGGAAGAACGCCGATTGACCAGCATGCTTATCAGGTGCATGTTGGAAGCATGCGATCCCAAAGTAAAGGTTCTCTTAAACTAAAATCAGCCAATCCACTGGACCACCCAATCATTGACTTTAACTACATGTCAACCAAGGAGGACTGGGATGAGATGAGGGCTTGTGTGCGACTCACAAGAGAACTTTTTCAGCAGAAGGCATTTGATGAATTCAGAGGGGAAGAGCTCAGCCCAGGCAAGAATGTACAGACTGATGAAGAAATAGACGAGTTTGTTCGCAACAAAGCCGATACAGCGTACCATCCATCATGCACTTGTAAGATGGGCGAATCTTCAGATAAAATGGCTGTCGTCGATAATGAAGCTCGCGTGTTTGGTATAGAACGGCTTCGTGTAGTGGACTCCTCTATCATGCCTAGCATTGTCAGCGGTAACCTTAATGCGCCTACTATCATGATTGCAGAGAAAGCAGCTGATCATATTTTAGGTAATCCAAAGTTACCCAAGTCAAATGCTCCTGTTTTTAAAACACCAGAAAAAGGTCAAAGATAA

Transcript

EGACTEQ4350032407-PA

aatggcgcGAGGAGGAACGGAGTTGTTCGTGGGAAGACTATCTAAAGAAACTAAGCAAAGAGACCTTGAAAACGTCTTTTACCTTTACGGCAAGCTTTCTAGATGCGATATCAAATACGGAAGAGAAAGGGcTTATGGATTTATTGAGTATGAAGATCCCAGAGATGCTGAGGAAGCCTTGAGAAGAGAAAATAACAGAAAACTCTTTGGATCCAGAATCGTTGTTGAGTACGTGAAAGGTAAAGAACGAGGAGGTCCGGCTGGTGATGAATGCTTCAAGTGTGGAAGACTAGGGCACTGGGCAAGCAGCTGTACAGTATCAAGAGACGATACAGATGGTTTTCGGGGCTCTGGAAGGCATGCCAGACCCTCACCAGCAATACTTTTGAAGCGACCACCGCCAAGCCGCTATAGATCTCGCTCAAGATCACCAAGAAGATTCCCTAACCCTCCTCCTCGAAGGCGCCGCTCTTTAAGCCCCCCAAGAAGGCCACGCCCTCCACCCATTAGCCGCAGCAGGGATAGATTGCACAATGGAAGCCGCTCAATTGCCGATAAATTAATTTtgagaaatattatttataaaggtGTCATTCATCCTCATTCAAATACTCGCAACTCAATAACAACCTTCTCTTCTACTCATGATTACGTCATCTGCGGTGCTGGCTCAGCAGGATGTGTTTTAGCCAATCGTCTTTCAGCAGATCCAAACAACAACGTACTACTGCTAGAGGCAGGACCAAGGGACTGGACTTGGAAGATTCACATGCCTGCCGCTCTGATCTATAATCTTTGTAATGACAAGTACAACTGGTTTTACCATACAGTACCACAAAAAAACTTGAATAATAGGGTAATGTATTGCCCAAGGGGGAGAGTGTGGGGAGGTTCGTCTTCCTTAAATGCCATGGTATATATCAGAGGACATGCATATGACTATGATAGATGGGAAAGTGAAGGAGCTAAAGGCTGGTCGTATGCTGACTGTCTGCCATACTTTAAGAAGGCACAGACTCATGAACTAGGTGCTGATGAATACCGTGGTGGCGATGGACCTCTACACGTATCCAgaggaaaaacaaacaatccaTTATTCAGCGCATTTCTTCAAGCAGGACAAGAAGCTGGTTATCCGTTCACAGAAGACATGAATGGTTATCAACAGGAAGGacttggatggatggatatgacTATATATAAAGGAATGAGGTGGAACACAGCAAATGCTTACCTTAGACCCATTAAACGGAAGAGGAGGCGACACCTGAGAACAGAGACCAGAGCATTCATCACTAAGATActgtttgaaggcaacagagcTGTTGGCGTAGAATATCATAAGGATAACCAAATAAGAAGAGCAAGAGCAAACAAGGAGGTGATCCTATCTGGCGGAGCAATCAACTCACCTCAGCTCCTGATGCTGTCTGggattggtgatggtgatgaactaaaaaaacatgggatccctgtggtttgtCACCTACCAGGAGTGGGACAAAACCTTCAGGATCACCTCGAGATGTACATACAACAGGCGTGTAAGAAGCCAGTCACTCTCTATAGTGCTCAGAAATTATGGAATATGATACCCATTGGCATGAAATGGTTTGCAACAAGGACAGGTCTTGGAGCCACAGCACATCTTGAAGTAGGAGGGTTCATTAGGAGCAAGGAGGGTGTTCCTCATCCAAACATACAGTTCCATTTCTTGCCATCTGGAATAATAGACCATGGAAGAACGCCGATTGACCAGCATGCTTATCAGGTGCATGTTGGAAGCATGCGATCCCAAAGTAAAGGTTCTCTTAAACTAAAATCAGCCAATCCACTGGACCACCCAATCATTGACTTTAACTACATGTCAACCAAGGAGGACTGGGATGAGATGAGGGCTTGTGTGCGACTCACAAGAGAACTTTTTCAGCAGAAGGCATTTGATGAATTCAGAGGGGAAGAGCTCAGCCCAGGCAAGAATGTACAGACTGATGAAGAAATAGACGAGTTTGTTCGCAACAAAGCCGATACAGCGTACCATCCATCATGCACTTGTAAGATGGGCGAATCTTCAGATAAAATGGCTGTCGTCGATAATGAAGCTCGCGTGTTTGGTATAGAACGGCTTCGTGTAGTGGACTCCTCTATCATGCCTAGCATTGTCAGCGGTAACCTTAATGCGCCTACTATCATGATTGCAGAGAAAGCAGCTGATCATATTTTAGGTAATCCAAAGTTACCCAAGTCAAATGCTCCTGTTTTTAAAACACCAGAAAAAGGTCAAAGATAA

Protein

Uniprot

Uniprot term	Description
Q6UPE0	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q8BJ64	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
Q8NE62	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00732	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR011533	Family	Oxygen-dependent choline dehydrogenase	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000172	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012132	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR007867	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008812	Molecular Function	choline dehydrogenase activity	Interproscan
GO:0019285	Biological Process	glycine betaine biosynthetic process from choline	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00108	betA, CHDH; choline dehydrogenase	EC:1.1.99.1	Glycine, serine and threonine metabolism	ko00260	deepkoala