Gene detail

Detailed information of EGACTEQ4350032560-PA in Actinia equina

Genomic Location: WHPX01001223.1:1036259...1051889
NR annotation: XP_031551342.1, WD repeat and HMG-box DNA-binding protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350032560-PA

ATGTCTGCTGTTGTCAAACCTATGAGATTCGCTCATAGTGAAGGACATACTGATGTTTGCTACGACCAAACTGGACAGCATTTGTTGACTTGTGGTTCTGATGGAGACATTCGTATCTATAACGGCTTTGATGATAGTGACCCTGTATCTATACAAGCTGGGGAGAATGTCACAATGGTTGCAGTAAAGGGTTCACCTGATGGTATTTTGACCAGATTTCCTTCTACTGTCAATCATATGTGTGTCAATCAAGCTGGGACTCTTCTCGCTGCTGGCTCCAGTGACTTCTCCATCAAAGTTGTCACCCTAGAAGATAACAGTCAAAAGTCATTCAAAGGTCATGCAGCACCTGTACTGGCAGTCGCGCTGGATCCTCAGGACATGTACCTGGCTTCATCTAGCTGTGATGGTACTGTCAAGATATGGAAAATGGAAAACCAagCTGTTGTAAAGACTATGAATATTTTGCCCAAGGTCAATGATACCAGtgcGTTCAAAACATGTAGAATTGGCTGGCAGCCAGGAAATGGAAAGATATATGAAAGAGACAGTTGGAATTTATCTTTCACTTTGAACAAAGAAGGTCACAGTGAGCCACCTATCTTAACcatgtatccatccatccatccatccatccatccatccatccattcagaATCAAGAGTTcaacatgaaaacaagtttccAATCACTGGTATTGCCTGGAATCCTTCAGGTACTAAAGAAATTGCTTACACGGACAACCAGGGACAGTTTGGTATAATTGAGAATATTTCTACCAAGTCTACAGTAACAAAGCCTTCAGGATCAGAGGGTACTGTGAAGGCCAGTGGTGAGAATGGTTACATGGATGATGCCATGATGGCTACAGCAGTGGCAGATTATGAAAGTGATAATGACTCATTAGTAGCAACTAAAAGACGCCGTGTTAAACAAAACTTGATAGATGATGAggctgaagatgatgatgatgatgaagatgatgaattcAAAGaaattagaaaattaaaggCTCAGTTGGCTGCTCCGTTGGACTTTGATGACGCTAGTAATGATGTTAATGCTGATACTGCCAGTGAAGTCTCTGTAAAAAAGGTGTGGAACTCAGTGGGTATAGTAAGATGTCACACAGAGGAAGATGACCTATCAACCATTGAGGTTGAGTTCCATGATGCAAGTACTCACCATCCCTTACATCTCACTAATCATCTTAACCACACCATGGCTGCGTTGTCTTCTAGTGCTGTACTACTGGCATGCAAATCACAAGATGATATGAAAAGTAAACTTGTCTGTCTCCACTTTGGAAGTTGGGACAGTTCAAAGGAATGGGTTGTTGATCTTCCAAGTAAAGAAGAGATAGAGGTAATTGCTGTGGGACAAAACTGGGCAGCGGTGGCCACTAACAAGTTCCATATTCGTATCTTCACACTGACGGGTGTCCAGCTGTCCCTTATTAGTGTCCCTGGTCCAGTGGTTTCAATGTCAGGTCACAACAGCCAGCTTATTGTAGCCTATCATGCTGGGAACCCTTTACCCAATGAACAATCTCTTGGATTCAAGCTTTTTGACTTGAGCACTCAACAGCAGATTGTTGCAGATCAAAGAATACCTCTCAGTAGGAAAGCAACTTTAAGCTGGATTGGtaatgatgatggtgatgatggtagtaataatgatggtaaagatggtaatgatgatggtggtgattgtcACGATGGGGttataatgatggtgttgatggtgatgatggtagtaataatgatggtgatgatggtaatgatgatggtggtgattgtcATAATTGAAGTTATGATGATGGAGTTaagggtgatgatggtgatgatggtaatgatgatggtggtgattgtcATAATCAAAGTTATGATGATGGAgttaatggtgatggtaatgatgatggtggtggttgtcATGATCAGGTTTTCTGATGAAGGAACACCAGTAGTAGTAGATTCAGTGGGTATCGTCAGGTTTCTCAACCGCTCATTTGGTTGTACTTGGACCCCAGTCTTGGATACCAAGAGTCAGTTAAAGAACAAGTCTGATAATTATTGGGTGGTTGGACTGGAAGAGAGAGCTAGACAAATAagGTGCATATTGTGCAAAGGATCCTCGTTTCCCCCTACATTGCCACGCCCTATCCAGGCTGTGTTACCCCTTCAGCTTCCCCTTTGTGAAATGTCAACAGACAAGGGCGAGAAAGAGGAAAATTGGATGAAGTCCAAGTTGATGTCTTACAGCTACAAGCACTGCGCAGAGAATGGGTTTGAGTTTGATGAGGAAGAAGCCCAACAAGCAGAAACCTACCAGATACAAACACTCATGAAAATGTTCGCTctgGCTTGCAAAAGTGATCGAGAGTTTCGTGCCTTCGATATCTGTGAACTTCTTCCAAACCAACGCTCAGTTAGCCTTGCTATCAAATATGCTGCTGGCATCCGAAAAATGAACCTGGCTGAGCGTTTGAACGAATTAGCTCGACGTAAAGccgaagaggaggaagaagcactagaaaatgaattcgataCCCAGTATGAGATGCAGCAACATGATTGGAGAAGCGCACCAAGGAGCCTTCCAAAGAAGGCTACTAAACCAAGAGTAAGGGAGCAAAGAGAAGAAGATGAGGACGAAATGGAAGACGAAAATGATCAAGATGAGTATGCTGAGGACGAAGATGATGACTCCATGACAATCAATGaTAAGAGAAAATCAAGGCATTCGAGTGCCAGTGACGATGGAAAACCAAATCCCCTACTACAAAAAATATCCAAACCATCCAAGTCGACTAGTTCGCCCTCTCTCAGCTCATCTCAGGGCCGTTCAAATCCTTTCAAAGTCCTCAGCCCAAGCAAAAGATCAAGAGGAGGAAAGAGCTTCTTAGAAAGTGTTGAACAAGAACAAAAAGCAGCAACTGAAGCCACCAAAAATAAACAACcaTCCGTAGCTAGGaagaataacaaaaagaaagcaACGAAAACAGCTAAGCAGATGACCCTACTGAGCCCGACTACAAAACCAGATGAACCTGCTGAAAAGGACGACAAAACAGATGAAAAACCAGATGAGAAACCAGCAAATACTAAAAAATCTGGTTTCACGTTTTGGCTGGAAGAGAATCGTCCTATTATcgcagaagaaaacaaagacgtATCTGATGGAGAATTGATTAAGCTATCAATGAAACGATGGAAAAGTCTCTCTAATGAAGAGAAGAAAACGTGGAATGACAGAGCCTCCGGGCACGGACAAGATTCTGATGATAAAAAACGAAAACGGGAAAATACTGAAAATGATGAGAATGAAAATGTGAACGAAGCTGTTATCACCAAAACTGCCAAGAAAATCAAAGCTGCTGGAGAAAATAACGTCAGTTCCAAGCTGGCAGGCTTTGCATATtcaaaaagttaa

Transcript

EGACTEQ4350032560-PA

Protein

Uniprot

Gene family

Uniprot term	Description
O75717	WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=WDHD1 PE=1 SV=1
O13046	WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis OX=8355 GN=wdhd1 PE=1 SV=1
P59328	WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Wdhd1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	HMG
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF20946	Ctf4_C	DNA polymerase alpha-binding protein Ctf4, C-terminal domain	Domain	Interproscan
PF12341	Mcl1_mid	Minichromosome loss protein, Mcl1, middle region	Repeat	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR048591	Domain	DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR022100	Domain	Minichromosome loss protein Mcl1, middle region	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19932	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11274	WDHD1, CTF4; chromosome transmission fidelity protein 4	-	Chromosome and associated proteins	ko03036	deepkoala