Gene detail

Detailed information of EGACTEQ4350032616-PA in Actinia equina

Genomic Location: WHPX01001223.1:593902...612642
NR annotation: XP_031559552.1, rac guanine nucleotide exchange factor JJ-like [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

EGACTEQ4350032616-PA

ATGTGGAGTTCCCAATCTGAGGAGACGAAAATGGCACAACAAGACTTATCTTATGCATTTCAGCCTGTTATCCATGAACCACTTTCCAGAGCAGATGTTTCCAGCCTAAGCCCTAAAGACTGTGCCCTAAACAATGAAACTAACTCTGAGCAAAAAGAAGTTAAGGATTTATTTGTAGATTACAGTTATCTTGGCTATGATGGCAATAAGGCAGCTGATACTGATGATGGAAGCATTTCTCCTGTTTCTTCTGAAGCccaaaatgatgaaaaagAGGCCTTGGCAAGCATCGAAGAAGCAGACAAATGCAGAAATAATCATCCAAGAAAAGCCATGTCACTTTATTTGAAAGCTGGCAAAGCTCTTGTCTTGTGCAATCAAGCCGATAGTGCGCTGAAGTGTTTCAGATCGCTCATACTGCTAGCCACGGAACAATTAAACAGAGTAAAgaacgaaaagaagaaaattccaAAGTTAATAAGATCCGAGTCAGAAACAGAATCTGAAACAAAGgaaagaaataaagtAGCAAGAACAAAGAGCTGTGAATTACCTAAAAAACAAAAGAGCACTGAAATGCTGTCCCCCGAAATTACTCGAAGAAATTGCCAGTCATTCAGTGaatgtgataatgatgttgaagaCGCCAACCTGGAGGTGGCTGTAGAAGAGGTAGTACAACAAGATATGTGTGAATTTGTTGCTGTAGAAGAAGTTAATAACGTGGAAGAGAACACGGGTGGAATTGTTATGAATAGTGTTGAGCAAGAGGTTTTTGTACCAGAACAAATGACTTCGTGTGAGCCTGTTATGGAGATGGAAGTTCAACAAGATTTACCAGTGTTTTCAGTCAGTGAAGTTAAGGATATTTCATCTACTGAAGAAATGACAATGTCTTGTGAGAGTCCGGACGGGGTTTGTGTTGTAAATTGTTTTGAGACTGTAGCgtcattagactttgaagtagCAACAGTGGAATCACTGGATGACTCGGCTAGTACTCATAGTAGCACCAGTAACGAGGATATTGTACAGACATTAAATACTGAAATAGTCATGTTGGAATGTAATGATGAAGTAATGATGTCAGCCGAAGAGGTACCAGCCAATCCACAACAAAATGCCTTCATTAGGCGAGGGTATGTAGTGAGTGAGTTGATTGACACAGAGGAgaactacatccgggacctTGGGCATGTCATTAAGGGTTACATGGCTGCTCTGTCTAAAGAGTTTAACGTTCCAAACGAActcaaaggaaaagaaaaagttatattttcaaacatccaaaatatccacgagtGGCATTCATCTGATTTTGTCAAAGATCTTAAGGAATGTGAAGACGATCCATCAAAATTAGGCGAAGTCTTCTCTTCCGCAGAAACAAAACTCGAAGAACTATATACGATATATTGCAGATCAAAAGCCAAGTCTGACGAGCTTGTCCTTCCTCATAAGGAATCCTTTTTTAAAGACTGTCGAAAGAGACTAGGGCATCGCTTGCAGCTTTCAGATTACTTAATCAAACCAGTACAAAGAATTACAAAGTACCAGTTACTACTTAGGgatATTTTGAAGTTTACGGAAAAAGCAGGGGAAGATGGTAGCGAAATCCAGCGGGCCCTTAATGTGGCACTAAGAATCCTGAAACGAACCAATGATATGATATCCGTTGCTTCGATACAAGGATATGACGCAAAGCCGGATGATACTGGGGATCTCATTCTCAGGGAAACTCTTGAAGTCGCTGAAGGGAAATATCGACAAAAGATGAAGGAACGCAATGTTTTCCTGTTCGATAAACTTATCGTTGTTACAGAGGCTCTCGAAAAAGAAGGAGGAGTAACGGAATTACGTTTTCATAACAGTATTAAGACCCGTGGTCTAGGACAGACAGAAACAGTGGACAGTGATCCTTGTAAATGGGCCGTGTGGCTGCGGAAACGGAGCAACGCAGAGATATACGTGTTCAGGGCTCCATCCATCGAAGTCAAAAACACGTGGGTCAAACACATCAAAGAATGTAACCTAAAAAAGAAAGCTCCAGGACTTCTTAAATctttataTCGGTCAAGAACCTTTCGTAGAGAAGAGTCAGACGCTAAGGAGATGCTAGACGCTTTGACACCAAACTTACTATCAGTTGAAGACGGACCTGCGGAGTGTGGAAGTGATAGGAAATCTAAACGAAAAAGTTCTAAAGTCAtgtcaagaaagaagaaaaattcaGCCATTTCAGACAGACTAAAGGAAAACATTCTGAAGTTTCGTGCTGAAGAGCAGATGCTTTCTGTCGAAGAACCTTGTGAAGTATCATACGCTGAACCGCCCGATAGCTTAAGCTTTTCGCAAGCAGATATTCCTCAATCTCCTGTCTCACCCGATCCACTAGCCCAGCCAGAGTCTACTATCCAACGGCGAATAAAGATTGAGACTGAGGAGAATCAGCTGAAAAAGGTATTGTTGCTGACTCGTTTGATCGCGGCAAGGCTACTCCAAACAAAAGACGCGGCTGAGGCTCTTTCCTTGTATGAAGATGTGATTGGGAGTGTTTTGCCGGTTGAAGAACTCAGAAAATACGAAGGGTCCATTACTTCACGAGATCTACTGCTTCAGCATTGTACTGAAATTTACGACAAATGGCGAAAAGAGAATGTCTTTACAAGTGAAGACGCAGAAGAGCCCTATACATCAATAACAAGCCATTTAAGCGAAACAGCAGGGTAA

Transcript

EGACTEQ4350032616-PA

GTCATGTCACACATGACAAGCTGCTTCGCTCGTCAAACTTTCGCGACTGCCTAGCAGTACGAAAGCAGCATTATCATTACAATATTGAATGCTTTTTCACTTTACAATGGTTGTACGGTATTTCCCTGGCGGGATGTTTGACTGAAATCCCATTGAATGGTGGCGTAGAACCTGGATGTAGTTGTGGCGGTTAAAGAAATTTGTTTATATGTGGAGTTCCCAATCTGAGGAGACGAAAATGGCACAACAAGACTTATCTTATGCATTTCAGCCTGTTATCCATGAACCACTTTCCAGAGCAGATGTTTCCAGCCTAAGCCCTAAAGACTGTGCCCTAAACAATGAAACTAACTCTGAGCAAAAAGAAGTTAAGGATTTATTTGTAGATTACAGTTATCTTGGCTATGATGGCAATAAGGCAGCTGATACTGATGATGGAAGCATTTCTCCTGTTTCTTCTGAAGCccaaaatgatgaaaaagAGGCCTTGGCAAGCATCGAAGAAGCAGACAAATGCAGAAATAATCATCCAAGAAAAGCCATGTCACTTTATTTGAAAGCTGGCAAAGCTCTTGTCTTGTGCAATCAAGCCGATAGTGCGCTGAAGTGTTTCAGATCGCTCATACTGCTAGCCACGGAACAATTAAACAGAGTAAAgaacgaaaagaagaaaattccaAAGTTAATAAGATCCGAGTCAGAAACAGAATCTGAAACAAAGgaaagaaataaagtAGCAAGAACAAAGAGCTGTGAATTACCTAAAAAACAAAAGAGCACTGAAATGCTGTCCCCCGAAATTACTCGAAGAAATTGCCAGTCATTCAGTGaatgtgataatgatgttgaagaCGCCAACCTGGAGGTGGCTGTAGAAGAGGTAGTACAACAAGATATGTGTGAATTTGTTGCTGTAGAAGAAGTTAATAACGTGGAAGAGAACACGGGTGGAATTGTTATGAATAGTGTTGAGCAAGAGGTTTTTGTACCAGAACAAATGACTTCGTGTGAGCCTGTTATGGAGATGGAAGTTCAACAAGATTTACCAGTGTTTTCAGTCAGTGAAGTTAAGGATATTTCATCTACTGAAGAAATGACAATGTCTTGTGAGAGTCCGGACGGGGTTTGTGTTGTAAATTGTTTTGAGACTGTAGCgtcattagactttgaagtagCAACAGTGGAATCACTGGATGACTCGGCTAGTACTCATAGTAGCACCAGTAACGAGGATATTGTACAGACATTAAATACTGAAATAGTCATGTTGGAATGTAATGATGAAGTAATGATGTCAGCCGAAGAGGTACCAGCCAATCCACAACAAAATGCCTTCATTAGGCGAGGGTATGTAGTGAGTGAGTTGATTGACACAGAGGAgaactacatccgggacctTGGGCATGTCATTAAGGGTTACATGGCTGCTCTGTCTAAAGAGTTTAACGTTCCAAACGAActcaaaggaaaagaaaaagttatattttcaaacatccaaaatatccacgagtGGCATTCATCTGATTTTGTCAAAGATCTTAAGGAATGTGAAGACGATCCATCAAAATTAGGCGAAGTCTTCTCTTCCGCAGAAACAAAACTCGAAGAACTATATACGATATATTGCAGATCAAAAGCCAAGTCTGACGAGCTTGTCCTTCCTCATAAGGAATCCTTTTTTAAAGACTGTCGAAAGAGACTAGGGCATCGCTTGCAGCTTTCAGATTACTTAATCAAACCAGTACAAAGAATTACAAAGTACCAGTTACTACTTAGGgatATTTTGAAGTTTACGGAAAAAGCAGGGGAAGATGGTAGCGAAATCCAGCGGGCCCTTAATGTGGCACTAAGAATCCTGAAACGAACCAATGATATGATATCCGTTGCTTCGATACAAGGATATGACGCAAAGCCGGATGATACTGGGGATCTCATTCTCAGGGAAACTCTTGAAGTCGCTGAAGGGAAATATCGACAAAAGATGAAGGAACGCAATGTTTTCCTGTTCGATAAACTTATCGTTGTTACAGAGGCTCTCGAAAAAGAAGGAGGAGTAACGGAATTACGTTTTCATAACAGTATTAAGACCCGTGGTCTAGGACAGACAGAAACAGTGGACAGTGATCCTTGTAAATGGGCCGTGTGGCTGCGGAAACGGAGCAACGCAGAGATATACGTGTTCAGGGCTCCATCCATCGAAGTCAAAAACACGTGGGTCAAACACATCAAAGAATGTAACCTAAAAAAGAAAGCTCCAGGACTTCTTAAATctttataTCGGTCAAGAACCTTTCGTAGAGAAGAGTCAGACGCTAAGGAGATGCTAGACGCTTTGACACCAAACTTACTATCAGTTGAAGACGGACCTGCGGAGTGTGGAAGTGATAGGAAATCTAAACGAAAAAGTTCTAAAGTCAtgtcaagaaagaagaaaaattcaGCCATTTCAGACAGACTAAAGGAAAACATTCTGAAGTTTCGTGCTGAAGAGCAGATGCTTTCTGTCGAAGAACCTTGTGAAGTATCATACGCTGAACCGCCCGATAGCTTAAGCTTTTCGCAAGCAGATATTCCTCAATCTCCTGTCTCACCCGATCCACTAGCCCAGCCAGAGTCTACTATCCAACGGCGAATAAAGATTGAGACTGAGGAGAATCAGCTGAAAAAGGTATTGTTGCTGACTCGTTTGATCGCGGCAAGGCTACTCCAAACAAAAGACGCGGCTGAGGCTCTTTCCTTGTATGAAGATGTGATTGGGAGTGTTTTGCCGGTTGAAGAACTCAGAAAATACGAAGGGTCCATTACTTCACGAGATCTACTGCTTCAGCATTGTACTGAAATTTACGACAAATGGCGAAAAGAGAATGTCTTTACAAGTGAAGACGCAGAAGAGCCCTATACATCAATAACAAGCCATTTAAGCGAAACAGCAGGGTAAGTCAAACATagtaaggcctagggcaaacgtcgaactttccatgcaccg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0KL02	Triple functional domain protein OS=Mus musculus OX=10090 GN=Trio PE=1 SV=3
F1M0Z1	Triple functional domain protein OS=Rattus norvegicus OX=10116 GN=Trio PE=1 SV=4
O75962	Triple functional domain protein OS=Homo sapiens OX=9606 GN=TRIO PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051336 all species →	Family	Rho GTPase-activating Guanine Nucleotide Exchange Factors	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22826 all species →	RHO GUANINE EXCHANGE FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EGACTEQ4350032616-PA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.