Gene detail

Detailed information of EGACTEQ4350036663-PA in Actinia equina

Genomic Location: WHPX01000038.1:1382496...1389597
NR annotation: XP_031553047.1, pre-B-cell leukemia transcription factor 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350036663-PA

CAGCTCGAGAACACGACCGCCAACCGCGCGTAACACTCTTTCACAAAAAACGTAACAGCTATCCCGAAGGACATAAACATCACTAACTCAATTCAGCTGGGGAAACCTGTTTCTAAGTAATACTTTCAATTTAAGAGTGCCAAAGGCGGCCTAGCGTCTCGTTTCGATCGACCAAATTCGAGCATCGTGAGACGACATCTTGGATTGTTTGCCGAAGGAAGACGGAGCTAAGAGGTTCTATGGAAGGAAATGATAGATTGATGCATACTTCTGCCCCAATGCCAGTGAATTCTGTATCGATGATGCATGGCCAACAGGGAGCTGAGATGAAACAAACCGAGGAATTAGACGGACGTAAGCAAGATATTGGCGATATTTTGCAGCAAATTATGAGCATCACAGATCAGTCATTGGACGAAGCACAAGCCAAGAAACATGCTTTGAACTGCCATCGCTTGAAGCCCGCCCTTTTCAATGTTCTCTGTGAGATCAAGGAAAAGACAGTGTTGAGTATTCGTGGGTCACAAGAAGATGAGCCACCAGATCCCCAACTCATGCGACTGGATAACATGCTGTTGGCAGAGGGTGTTGCTGGTCCAGAGAAGGGTGGGGCAGCCGCAGCAGCTGCTGCGGCAGGAGTACATGAGAACCAATCAGAACATTCTGAATATAGGAACAAACTAAACCAAATAAGACAGATATATCATACTGAACTGGAAAAATATGAACagGCTTGCAGTGAGTTTACTACACATGTCATGAACTTACTAAGGGAACAATCACGTACCCGTCCTATATCACCCAAGGAAATTGAAAGAATGGTTGGAATCATTCATCGCAAATTTAGTGCAATACAAATGCAGCTTAAGCAAAGTACATGTGAGGCAGTTATGATTCTTAGATCAAGGTTTTTAGATGCAAGGAGAAAAAGACGAAACTTTAGCAAACAGGCAACAGAGATcctaaatgaatatttttattcgcATTTGAGTAATCCATACCCAAGtgaagaagcaaaagaagaattGGCACGGAAGTGTAATATCAGTGTTGCACAGATATCTAATTGGTTTGGTAATAAACGTATTCgatacaagaaaaatattggTAAAGCTCAAGAAGAAGCAAGCCTATATGCTGCTAAATCTTCACAAGCAGTGGCAAGACCACCAAGTCAGGGGGGGCAGCCTCAAGCAGCTGGTAATGGACCCACTGGACCAGCCGGTGTTCCTTCCTCTACTCAAGGtttgtctttttattgtttcagTATCActacaaatattttcaaactttctgtgtattttgttttgttgttactCTTGGCGCTCCAGTCTCTCAAAAGAGAAAGGTCAAAGACGTAATGaacaaacaatacaataaacaagGACCACTGGTGCAAAAGACCTTTGGAAGCCTGTATATTGAATAGCCCCATAAAAGTTCACTTGCaaagaaaaagtcaaaaaagCTGTCTTAAGTTGAATCAAGATGTTTAAGAGCTTTAATTGTCACACAACAGTAAATATTAAGGGATTTTGTATGTATCTTTTGATATTTATCTTCTGTAGGGGGATTTGCCATGAGCTCACCAGGGATGTCACCAACATCACAGCCTCAGATGTCACAGCAGCCAGGAGAAATGTACATGGCAGGTGTGCAGATGAATGGTGGAATGGGTTCTGAGTACCAAGGGGGGTCAGCAGTAGGAGCCAATGTACAATCACAGGTGCCAGGCTTAAGACATGTCATGTCACAGGCAGCATCAGCATATGATCCAAGTGGTGGACACATGCAAGGTCATggacagcagcagcaacagttGTATCATGACCCACACCATATGCACCAGCAGGCTGGAAGCCAAGGTGTAGGCAATAAAGGAGGACCAGATGGAAACAGAGGTAACCTTCCATTATTAAATTAAGGCActggaatttcaaaatttgttgGAGGGAGAAAGTGCATATAGTTCAAATTCAATATGAATCTCAGGGGGAATCTCACAAGTGCCTTGCTATTATCATGACAGCACTTGCTGTATCCAAGTTTTTTCACTGAATGAGCAGTGATCTTGCAAACTGCACAACTAGTTCCAAATTCATCAATTCCATACTCTGATTGTGCTTAATGTTCTTCTTAACCATGAGAGAAGCAATATGATTTACAAAGTGTTGCAAAAAAAGAGTTGGCTGAATTTTCTTTggaacttgttttttttttttgtcaatgtATACTGATTTTTTGAACCAGTTATAACATTTTATTGTGTTGTAATTCTTTCTAAAGGTCAAGAAGGTGAAACCTAGGCTTCTTGGAAATATAGGATCATGAGAAGATAAGGAACTAGCTGTTAGTGGATTAACCTACATGAATCCTGCAAGATTATAAATCTTACTTCTCTGAGAAAGTCAAATGGCTCATTGATGTCATGGGAGATAAGTTGACACAGTATTATTTGATTTGCTTTGCCTGCCactgaaaagaaaatatgatgtaaaaaaaaaaacaaataagaatAATAGCTAGATATTAAGTACATACATTTTGTTTAAGATTCATTCATAGCAGTGCTGATCTATTATGAGAAATGAATTTCTTTGTGAATTCTTATTTGTAATGGTGAGTTTAACACTGTTACATAAAGAAACAATGACATTGCCATAGATGCATAGAGATCTTGGGATTAATTCAACATTATTAGATTCTCTTTTAGACCAATGAGACCTTACATAAGAGGTGATCAAGCAATAATTGGAAATACCAGGAAATCCTAACATTTCCAGGAAACCCTGGGATATCAGGTTTTTATAGCCTTTTAAGTTATTGATGGTCAGTTTTAGAAGGGATTTCAAGGCATATACAACCTGTCTTCACCCTGCATGCATATAGATATTTGctgtacattttaaaaacttttagttCAATATATCAAGGCATCTCTGGCTGAAGTATCGCTGACTGAGTGCAATCAATGTTAATGCAAAGCCAAGATATTCAACATAAAAACAGACAAAGAAAGTGTGGGTATTGATGCATACATACAACTAGCACATTTTTCAGTATACAAGTCCTTAATTAATAAAAGAGCATATATATAATTACATATAATTAACATTTTACAACTGTTGTAGTTTGAGACAGATaaacaaaaagaatgaaagTGAAAGATAACAACATTTTAATAACTTGATTGTGGAGGTTtacttgtattttttcttttaagtccAGATGTTTagttaaatattaattttatcgaTCACAATATAGAGATAATAAATTGTAACTGcgatagaaaaaattaaaaaactgtattttttattattcgtTGTCGTTTTTCCTCCCCCCAAAAATGTGGATTTATGTTAACAGACTTGAGCGACTTGAGCAGTTTTTGCAGCATGAAAACCTGACCTAAAGTCTTGGTACCTTACTACTTCTAACATCGTTTTGCAGTAAGCGTTATGAACCTAGCTTATAGTGCGCATATGGATGGGAGGACCGTAATCGTAACTGGTCAGCTCGAAAGCTTCAGCATAGTAAATTTTTTGGCCACACACTAAAGGATCTTaccatttatttaaaaaaattaacaaatag

Protein

Uniprot

Gene family

Uniprot term	Description
Q7PMT1	Homeobox protein extradenticle OS=Anopheles gambiae OX=7165 GN=exd PE=3 SV=2
B4F6V6	Pre-B-cell leukemia transcription factor 1 OS=Xenopus tropicalis OX=8364 GN=pbx1 PE=2 SV=1
Q8QGC4	Pre-B-cell leukemia transcription factor 1 OS=Xenopus laevis OX=8355 GN=pbx1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03792	PBC	PBC domain	Family	Interproscan
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR005542	Domain	PBX, PBC domain	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0048568	Biological Process	embryonic organ development	Interproscan
GO:0048666	Biological Process	neuron development	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan