Gene detail

Detailed information of EGACTEQ4350038466-PA in Actinia equina

Genomic Location: WHPX01000881.1:143120...146098
NR annotation: XP_031569814.1, protein lin-28-like [Actinia tenebrosa]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P63237	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=cspE PE=3 SV=2
P63238	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=cspE PE=3 SV=2
Q89A90	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=cspE PE=3 SV=3

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18754	LIN28; protein lin-28	-	Messenger RNA biogenesis	ko03019	deepkoala