Gene detail

Detailed information of EGACTEQ4350040062-PC in Actinia equina

Genomic Location: WHPX01000459.1:533260...563484
NR annotation: XP_031557376.1, helicase domino-like isoform X2 [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for EGACTEQ4350040062-PC in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NDJ2	Helicase domino OS=Drosophila melanogaster OX=7227 GN=dom PE=1 SV=2
Q6ZRS2	Helicase SRCAP OS=Homo sapiens OX=9606 GN=SRCAP PE=1 SV=3
Q9NEL2	Helicase ssl-1 OS=Caenorhabditis elegans OX=6239 GN=ssl-1 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07529 all species →	HSA	HSA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014012 all species →	Domain	Helicase/SANT-associated domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050520 all species →	Family	INO80/SWR1 chromatin remodeling helicase	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45685 all species →	HELICASE SRCAP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000812 all species →	Cellular Component	Swr1 complex	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0043044 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0043486 all species →	Biological Process	obsolete histone exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11661	SRCAP, SWR1; helicase SRCAP/SWR1	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.