Genomic Location: WHPX01000459.1:533401...563484
NR annotation: XP_031557377.1, helicase domino-like isoform X3 [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350040062-PE in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9NDJ2 | Helicase domino OS=Drosophila melanogaster OX=7227 GN=dom PE=1 SV=2 |
| Q7X9V2 | Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=3702 GN=PIE1 PE=1 SV=1 |
| Q9NEL2 | Helicase ssl-1 OS=Caenorhabditis elegans OX=6239 GN=ssl-1 PE=2 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001957 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00176 all species → | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014001 all species → | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR038718 all species → | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000330 all species → | Domain | SNF2, N-terminal | Interproscan |
| IPR049730 all species → | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| IPR050520 all species → | Family | INO80/SWR1 chromatin remodeling helicase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45685 all species → | HELICASE SRCAP-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0140658 all species → | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| GO:0000812 all species → | Cellular Component | Swr1 complex | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:0043044 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0043486 all species → | Biological Process | obsolete histone exchange | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11661 | SRCAP, SWR1; helicase SRCAP/SWR1 | EC:5.6.2.- | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
