Genomic Location: WHPX01000899.1:390043...424929
NR annotation: XP_031565460.1, von Willebrand factor-like, partial [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
| CDS |
| EGACTEQ4350040926-PA |
| Transcript |
| EGACTEQ4350040926-PA |
| Protein |
| EGACTEQ4350040926-PA |
| UniProt accession | Description |
|---|---|
| Q2PC93 | SCO-spondin OS=Gallus gallus OX=9031 GN=SSPO PE=2 SV=1 |
| Q700K0 | SCO-spondin OS=Rattus norvegicus OX=10116 GN=Sspo PE=2 SV=1 |
| P98088 | Mucin-5AC OS=Homo sapiens OX=9606 GN=MUC5AC PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000825 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08742 all species → | C8 | C8 domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00094 all species → | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| PF01826 all species → | TIL | Trypsin Inhibitor like cysteine rich domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014853 all species → | Domain | VWF/SSPO/Zonadhesin-like, cysteine-rich domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR036055 all species → | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR001007 all species → | Domain | VWFC domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR002172 all species → | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR036084 all species → | Homologous_superfamily | Serine protease inhibitor-like superfamily | Interproscan |
| IPR023415 all species → | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR006207 all species → | Domain | Cystine knot, C-terminal | Interproscan |
| IPR050780 all species → | Family | Mucin/von Willebrand/Thrombospondin superfamily | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR002919 all species → | Domain | Trypsin Inhibitor-like, cysteine rich domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11339 all species → | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
EGACTEQ4350040926-PA.Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
