Gene detail

Detailed information of EGACTEQ4350041215-PA in Actinia equina

Genomic Location: WHPX01000267.1:114947...118275
NR annotation: XP_031551756.1, RING finger protein nhl-1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350041215-PA

ATGGAATCGTTCGTTGAAGATATTAAGAAGGATGTCCAATGTCCGCTATGTAATGATACTTTCACTGAACCAAAGATCTTGTCTTGTTTCCACACATTTTGTAAGCCTTGCGTCAAACGACACGCCGAGCAAGTCGACCAAATCAACATCTTCAAGTGTCCTCGATGCAAATCACAGACTTCTCTACCAGAACTGAGCAGCATCGAAGATCTACAGCCAAGTCTAATACATTCAAGAATCGCGAAGGATCTGGCGTTAGTAGAAGGAGAAAAGGCTTGTTCGGTTTCTGAGAGTCATTCGTCAGcttcttggtattgttttgacTGTGATCGCTCGATGTGTGATGAATGCGAGAAGAACCATTCAGTATTTATCAAAGATCACAAGATCGTTGGTCTGGctgatttgaagaaagaagatattCAGTTCCTAATAACAAGGGAAAATCCTTGTACAAGTCACCCTCATCACAGGCTAGAGTTTTTCTGCGAAGATTGTGATGCAATGATTTGCAGGACATGCTTGATAGATCACAAGGATCATAAGACAATGTCATTAGATAAGTTTGTTTCGATCAAGAAAGCTGAATTGTCAAAGCATCTGCAGGTATTAGAGCAGTTGAGATTAGATGACAAGGAAAAGCAACAACAAGTAAAGATTGCTAACACTATCAAACAACAgggagaaaaagcaaaaaaagaagtcaaagacAAAACCAAGAAAATCATCCAAATACTACAAGACAACGAACGAGAATTGCTGAGACAAATCGATGAGAACTTGGAAATAGCCACAACAAACTTGAATGTAATGCATCATATTCCAGCCGTCAAGGAATACATCAAGAATGTGATGGAAAGAGGACTGGCAAGTGAAATGATGAACATTCAAGAGACACAATGCTCTCAGAAATTTGCCTTCAACCATATTCCACCATCCTCTAGAATTGAATTAATTCCTAATCAAAAGCTGATGCGACAAGTGAATTCAGGGCTGGGAGAAATACAAACATATTCTTCCGAAACAGACCATACGAAGAGCACTATTCATGTGAGATCTGAGACAGAtgctttaaagaaagaaaacctgATAGTAACGACTAAAAGCTCTACAGGAAAACCCCATCATGATCCAAGGGATGTTATAGACGTTCAAATCAAGCctgaagaaaatgtgaaaatagaaaagaaacatgTGAGAACTGATGGTAAAGTAGAAGTTGAATTCATGGCTAAAGTAGCTGGTCAGTtgacagcagaggttcaagtgaatgggaatcatgtatctaacagtccactagTGGTGAATGTCAAGCCACAAGAGATGAGAACAACAGGACAGTTTAACATGAAAGGTGTAAATATAGGATCTAGTAATTTAAGAGGTATAGCAGTAAACAGAGACAATAGCAGGATCGCTGTTTCAAATGATTCTTCTGACTGTGTCTATGTATTCACCACTGATGGAGATCTCTTACTGACGTATGGTAGACGAGGTAGTGCACAGGGACAGTTGTATGGTCCTGAAGGTTTAGCATTTCTGAATAatacagatttagtcatagCTGACTATGGTAATCATAGGATATGTATAGTGAACACTACAACAGGGACATTGGTAAAAACCTTTGGTAACCGAGGTAACCGAGATGGAGAGTTTTGTAATCCATATGGAGTAcacgttgatgacgatggtaacatcattgtgtgtgatggtgataatcatcgtgttcaagtcttcacaagagacggtgactatcaatatcagtttggtttgacAACACAGGACGCGTTTGATCCAATTGATGTGATAACACATGATGGACTGTTTTACGTCGGTGATTATAATAATCACGTTATTCATGTATTTAAGAAGAAAGGTAACGTACCGACTAGAATATCGATGATTGGTGGTCAAGGCAGAGCTGATGGTCAGCTAAATGGACCATGGGGcctggctattgataatgaccatcatctaCTGGTGTGTGATTATGGTAATAACCGCGTACAAAAATTCACATTGGATGGTCGTTTTGTAGGAAAGACTTGTGACGTAACCAAGATCCCTAGatatataactgttttaaagGATGGTCAGTTGTTAGTTAGTACGAGTGGTTCTGGTGTCTGTAATAtctttgatgatggtgatgatgatgatgatgatggtgatgatgatgattaa

Transcript

EGACTEQ4350041215-PA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan