Gene detail

Detailed information of EGACTEQ4350045414-PA in Actinia equina

Genomic Location: WHPX01001314.1:40583...59727
NR annotation: XP_031569206.1, uncharacterized protein LOC116303754 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350045414-PA

ATGGTGAAAGTGTTGGCGGTCTTCATCTTACTCATTAGTCGTGCAATTCAGCAAACGCCTGCTGCACGAAACACCGACTGTCCCACCGAACAAATCAAAGTTACCGCCTTGTTGCTTCCTCCTTATGTTATCCATGTTAACTCGACTACGCACCAAGGCATTGCTTACGACTTCATCAAAAAGACTCTCGAAAGATGCTTCAACCATTGTCAAGTTGGGTCTGTAAGTTGGACATTGGTAAACAACACGAAAGACCTGGTTGAAATCGTAACAAACAAATCTACAGATATTGCATTTCCGATTACTTCGTATGTAGAGTATGAACTTGAGAACAGCGTAGACTGGTTTTCGGAAAATCATTCGGACTTTGTATTTGAAGTAATGATGGAGTCGCCTGGATTGTCTCATGTTATACATACTGAGAATTTCAATTATAAAGCCAGAATGCACATTGTGTCAAATTTGTTGGAGATTTGGCCGATagttgtgttttgtttgttaCTTGCGGGTACGTCTGGTATCTTTGTCTGGGCTTTGGAATACAGAGTAAACCGCTCTGAATTCCCGAAAAATTTTTTCACTGGTTCCTACGAAGGTTTCTGGTGGGCTTTTGTCACCATGACAACAGTTGGATATGGCGACAAAACTCCCAAATCAGTGTGCGGACGACTGTTTGGGGTGTTATGGATTCTAATCGGTCTAGTAATCATCTCAGTGTTTACTGCTGGTGCTACCAATTCTCTCAACGCTGGCATCACGTACTACGAATCTGGGATAAAAGGAAAACATATTGGGGTTCTCAAATATTCCGAGGCAGGTTATGTTGGAGTGAAGAATGGAGCGGAAATATCAGAGTATGATAATTTCAAATCGATGCACAAGGACCTAGGCGAGGACAAACTGGACGGACTTCTTATCGACAGATACGAGGCCGCGTTCCTACTCGATAAATGGCATGAAAACAATCTTCGAGTTCTCGACACAATTGATAAGGACATCAGTTACAAGTTGGTTCGTTTTTATGACAGGAATACGGCGCTAGGGAATAATAGCTGTTTTCAAGGAAGGATTCTAAGGCACTCCAGATTGACTCAAAACCTCGTGAATTTGTATATAAAGCCGATAAGGGCATTCAACATTGCACAACACTCTGTTGGTATATTTTCTAGAACAGCGCCTTCAACCACCATCACTGCTGCCGTGTTCAGTGGAACGTTTGCGTGCCTGATCATCTTAGGATCAATTTACCAGTTAATTTATCGCAGATGTGGTCTCTCGCGTAGAAAAACGTATAATGCTGAAGatgAAATGATAAACATGCATTCCCTTATGCTAAAAGAATTGGGCGAAAGCGTCAAAACGTTAATTGAGGATCTTAACAAACTAAGAAACAAGCTTCATAAACTAGATGCCAAAGAGCTATCTAAATTAAATATTGAGAAAGTGGCTGATCAGTCTGCATTCCTCTCAACCTTCCCATTCCTCAATCACATGATAGCTACAGAGGGTACTTCCAAGTGCGCGCAGTGCATCCTGGACAGGTTCCTGAGGAAGATGGCGTCCAACGAAAACGATACTCAGAAAGACGACTCTGGACCAGAAAATCAAGGTTCTGAACAGCTGACTAGTAATTCAGACCAACACAAGGAACAAGATGTTGACTCTCTGAAAGATGATAGACATGAGGAGCAAGCAATAGAACAAGAAAAGCAACAGGCATCTGAACAAAATTCAGAAGAAACTCAAGAAAAAGCAGAGAAAACAGTAACCAGTAATGAAGCAGCAGAGAAATCTACTGACAATGAAGAGCAGGAGCCACAAACATTGTATGTGGCAATCCAACCAGGTGCCAACATGGACTCTCCTCAAGTGGAACAACCAGCTGTCTATGTTGAGGTGGTAGAAGCTGGAAATGGTACTGAGATTGGTAGCAATGAAGAGCAAGTTGTCCAGGAAGGAATGGTTATTGAGCAGACACCTAACTCTGATGCAGCCAACATACCAACATCCATGGTGTCCCAAGTCATAGACCAAGCAGCTCTCTCTACAATACAAGCTGAAATGATTGCAGTCCAAGTACTCTCTCAGTCGGCATCAGGGGATATCCAGtatcttcaacaacagacaCCACAGCAGTTTATTCCTATAGTCTCTGGTGCTGATGCAAGCACACTCTCTACTTTACAAGCAGCACTGGCACAGGTACCATTATCTGCCCTTCAGATTGCTACCACCACACAGtcaggtgtgacgtcacatactATCACCCTACCCAATGGACAGACCATCCAGGTACCCATCTCACACTTATCAGCTGTGACCTCAGCCAATTCTGACATGTCCACTGCAGTTACATCTCTCATATCCAGCAACACAGATGCCATTATTGCTGCAGCAGCTGCAGGAGAAGCTGCAGGAGAAGCAGCTGGTCATAGTGGCCTTGGAACAGTTGCTGCTTCAGATATTAGTGAGGTAGAAGGCCATCAACCTGCGGAAGGTGAAATAACAGAGAGACAAGAAGGGGGTGAAGGAGAGGGAGAAGGTGACGATGAGAATAAGCCCAAATATACATGTGATATATGTGGTAAATCGTACATCCGTTCATGGTCCTATTACAGCCATATGAGAGAGCATGCCTCAGGTGAAAAGCAGCACAAATGTGAGGTCTGCGGCAAAGTCTTCAATTATGCAAGCAACTTGCGGCAACACATGCTTATTCATACAgGAGAGAAGCCGTATGAATGTGAATACTGTGATAAAGCATTTAATAACCCAAGTTCATTACGATCTCATGTTCTATCCCATTCTGAAGACAGACCATTTATATGCGATCATGAAACATGTGGAAAAGCCTTTAATAATCCAGGGTCCTTGAGGGTCCATAGGCGTGTCCACCAAGAAGAGAAGCCCCATGCTTGCACCCATGAAGGCTGTGACAAAGCCTTTAAGACTGCTGCAGAACTATCACGGCATACTTTCCGTCACACTGGAGAGAAGCCCCACAAGTGTGACCAGTGTGAGAAGGCTTTCATACGATATGATGACTTGAAGCGCCATTACCGTATACACACTGGAGAGAAGCCCTTCAAATGTGATCAATGTGATTTTGCTTGCATCCAATCCTTTGATCTTGTCAAGCATAAGTTCACCCATAGTGGTGACAAGCCGTATAAATGTGAGCTATGTACTAAGCAGTTTACCAGGCCTGCTAGGCTGAGGGACCATATGAGAACTCATACTGGTGAGAAACCCTACGAGTGTGATGTGTGTGGCAAGTCTTTTGCTATACAGACTGGACTCAAGTCTCACCAGGCTGTCCACACAGGAGACAAACCATTCAAGTGTGAGCAATGCGAGAAGACATTCCGTACCATGGCGGAACTGCAGTCCCACATGGGAAGGCACACTGGTATCAAACCCTTCAAGTGTGAGATGTGCGATAAGGACTTTATCTCTGCCATCACCTTCAAGAGACACACCATTGTGCACTCAGGTCAGAAGCCCTTCGAGTGTCCTGAATGTGGTCGTCGTTTTGCTCGTTCTACTGATCTGAAGGTCCATCTACCCGTCCACAGTGATgacaaaccatacaagtgtggGGAGTGTGAAAAAATGTTTACCAGGTTTAGCACTCTCAAAGAACATATACGAACACACACAGGGGAACGACCCTTCAAGTGTGAAGAGTGCGGCCGTGAGTTCAACCATCGTAGTCATTTTAATAACCACCTTCGCATACATACTGGTGAAAAGCCCTTCAAATGTGATACCTGCGACAAGGATTTCTCACGCAAAGCAAGTTTGAGGTACCACATGAAGGTTCATTCCAAAAATCGCGAACGTGCTCCAAGGTCTAAAAAGTCcagcgaagaagaagaagaaggaatggAAGAACAGATGAGCACTGTTAATACCAGCCATATTGGCCCAGATGCTGAAGTGCAGCTAGCAGAAGCTTTAGTGGCTGTTAGCGAGTCTATGATTGGCTCTGACGTTGGCATGGAGACAGGCACATGTCGTTGCTGTGGAAACAAGTGGTCAGGAATCTGA

Transcript

EGACTEQ4350045414-PA

Protein

Uniprot

Gene family

Uniprot term	Description
Q7TSH7	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Mus musculus OX=10090 GN=Kcnf1 PE=1 SV=1
D4ADX7	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Rattus norvegicus OX=10116 GN=Kcnf1 PE=1 SV=3
Q9H3M0	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Homo sapiens OX=9606 GN=KCNF1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF13465	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR050752	Family	C2H2-type zinc-finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala