Gene detail

Detailed information of EGACTEQ4350046301-PA in Actinia equina

Genomic Location: WHPX01000511.1:1445394...1457507
NR annotation: XP_031566644.1, mucin-5AC-like [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

EGACTEQ4350046301-PA

ATGCTACTAGACATGCCGAATAGTTTTGTACAATGTACTTTTGATAGTGACGTCTCCGCTAAAAAAGGTCCTGAGGTGAAGACAGAAAAAGTTGACCTCGATGGAATGGATTTTTTATCAGAGTGGTCGGGATGGAGCCGCTGTTCTCGTACGTGTGGGACTGGAATTCAATTTAGAGGCAGAAGATGCAACAGAGATAGAAGCCCTTGTCTTAAATATCCAAGACAGCACCGCACATGTAATAACCAGCTTTGTCCCTTGAATTCTCCCAACTTTCGGGACGTTCAGTGTGCGAAGGAAAATGACAGAGAAGTGATGTTGAAGGGGAAAAAAGCTAAATGGAAATCTATAGAACGAGGGACCACTAAATGTATGTTATTCTGCTATCCTATTGGTCAGCGTATATCGTTTTATCTTGGACGCGTGCAAGATGGTACCAAGTGTATAGACGAGCCGTATAGTGTCTGTGTCGCTGGCAAGTGCACGAGTGTTGGGTGCGACAGAGTTCTGGGTTCTCAGAAGATCTACGATAGGTGTAAAGTATGTGGAGGCAATGGATCTACTTGTAAGGCGTATTCAGGAATGATTGACCGAGAGCCAACAgctgaagagaaaaaagaaaGTTACATGAAACTGTTCGTTATCCCAGAAGGTGCAACTACAGTATTAATCAGTGAGGTTTCCCAGAACTACTTAGCCATCAAGGGAGCGTCCGGCGCGTTTGTATTCGGTGGTGACAAGAAGATGTCGGATCCAGGAACGTACCGAGTAAACGCTACAGACGTCCAGTATTCTAAACTACCCAGTGAGAAATCTGAAGCGGTCATGATCATGGGACCGACGAAGGAGGACTTTTACGTTATGGCTATATTGACTAATAACGATAACCCCAAAGCCGACTATGAATACTGGTTACCCAAAAACAGACCAACCAAGCCACCCAAGCCAGTATTTAAAGCGCATACTTTACCATCGACCGCAAAACGTCGGGTCACGAGCAAGGCAACGCCCCGTAAAATTATCTTTGACGAAAGCAATTTCTTAAAAGGTCGCAAAACAGAACTACTTTTTTCTTCATCGGAACGTCCACCTCGTACACAGCCTATGACAACTGCGGGTGACCTGGGTGAGTCATCCCCAAGCACTCCTGAACAGCATATATCAACTGAATACCCAACTACAACTGCATCTACATTTCCATCATCTCGTACACAACCTATGACAACTGCAGGTGACCTGGGCGAGACATCTCCTAGTATTCCTGAACAGCATATATCAACAGAATACCCAACTACGACTGCATCTTTACATTCATCTCCTCGTACACAGCCTATGACAACTGCAGGTGACCTGGGTGAGTCTTCTCCAAGTATTCCTGAACAGCATATATCAACAGAATACCCAACTACGACTGCATCTTTACATTCATCTCCTCGTACACAGCCTATGTCAACTGCAGGTGACCTGGGTGAGTCTTCTCCAAGTACTCCTGAACAGCATATATCAACTGAATACCCAACTACGACTGCATCTTTACATTCATCTCCTCGTACACAGCCTATGACAACTGCAGGTGACCTGGGCGAGTCATTTCCTAGTATTCCTGAACAGCATATATCAACGGGATACCCAACTACAACTGCATCTTTACCTTCATCACCTCATACACAGCCTATGACAACTAAAAGTGACCTGGGTGAGTCATCTCCAAGTACTGAGATACCGGAATACTCTACCACGTCACAAAACGAATTTACTTTCACTGATCCTTCAACTTCCGCGTCTCCGCAATCTACGGATACAAAGCCTGTGACTACGAAACAGTATTCTTCAGCCATGAGATTTCAGTCATCTCCAGGAACATTATCTACGTTTGAACATCCTATCGCAACACATGTGCCATTGATTCAGCGAATGACAGAAACAGTTTCCTCTGGGCATTCTGACAAGACCGGAAATGTTTCTCGAGGATCAAGTGTTAACTCGTCTATGAACGGTGGCGAAGCTGAAGGTCAGATTAATAAAGTAGAAAATCGTACACTTGATAATAGAACTGAATATTTACCAACACAGCCTACTGCAACAGAGGACCAAAATGCAACAGtacagcctactgtaacagAGAATCAGAATGCAACAATACAGCCTACCGTAACAAAGACTCAGAATGGAACAACACAACTTACTACAACAGAAAACCGGCATGCAACATCACAGCCTTTTACAACAAAGAACCAGAATGCAACAGTACAGCCTACTGCAACAGAAGAACAAAATGCAACAGTACAACCTACTGCAACAGAAGAACAGAATGCAATAGTACAACCTACTGCAACAGAGGAACAAAATGCAACAGTACAACCTACTGCAACAGAGGACCAGAATGCAACAGTACAACCTACTGCAACAGAGGACCAGAATGCAACAGTACAACCTGCTGCAACAGAAGAACAGAATGCAACAGTACAGCCTACTGCAACAGAGGACCAGAATGCAACAGTACAACCTACTACAACAGAAGACCGGAATGCAACATTACAACCTACTGCAACAGAGAACAACTATGCAACAGTTCAACCTACGGCAAGGAACCAGAATGCAACAGTACAGCCTACTGCAACAGAGGACCAGAATGCAACAGTACAACCTACTGCAACAGAAGGGCAGATTGTAACAGTACAACCTACTGCAACAGAGAACCAGAATGCAACAGTACAGCCTACACCATCAGAAGAACAGAATGCAACAGTAAAACCTACTGCAACAGAGAACCAGAATGCAACAGTACAACCTACTGCAACAGAGAACAAGAATGCCACAGTACAACCTACTGCAACAGAGAACCAGAATGCAATAGTACAACCTACTGCAACAGAGAACCAGAATGCAACAGTACAGCCTACTGCAACAGAAGAACAGAATGCAACAGAACCACCTACTGCAACAGAGAACGAGAATGCAACAGTACAACCTACTGCAACAGAGAACCAGAATGCAACAGTACCACCTACTGGAACAGAGGACCGGAATGCAACAGTAAAACCTACTGCAACAGAAGAACAGAATGCAACAGTACAACCTACTGCAACAGAAGAACAGAATGCAACAGTACAGCCTACTACAACAGAAGAACAGAATGCAACAGTACAACCTACTGCAACAGAGAACGAGAATGCAACAGTACAGCCTACTGCAACAGAAGAACAGAATGCAACAGAACCACCTACTGCAACAGAGAACGAGAATGCAACAGTACAACCTACTGCAACAGAGAACGAGAATGCAACAGTACAGCCTACTGCAACAGAAGAACAGAATGCAACAGAACCACCTACTGCAACAGAGAACGAGAATGCAACAGTACAGCCTACTGCAACAGAAGAACAGAATGTAACAGTACAACCTACTACAACAGAAGAACAGAATGCAACAGTACAACCTACTGGAACAGAGAACCAGAATGCAACAGTACAACCTACTGCAACAGAGAACGAAAATGCAACAGTACAACCTACTGGAAAAGAAGAACAGAATGCAACAGTACAACCTACTGGAACAGAAGAACAGAATGCAACAGCACAACCTACTACAACAGAGAACGAGAATGCAACAGTACAACCTACTGCAACAGAGAACGAAAATGCAACAGTACCACCTACTGGAAAAGAAGAACAGAATGCAACATTACAACCTACTACAACAGAGAACGAGAATGCAACAGTACAACCTACTGGAACAGAAGAACAGAATGCAACAGTACCACCTACTGGAACAGAAGAACAGAATGCAACAATACAACCTACTACAACAGAGAACGAGAATGCAACAGTACCACCTACAGCAATCGAAGTACAAAATACTACATTACTCTATATTATGACAGCCCATGTTAACACAACCAGTTCCAATGCCACAAGAAGTGGGAACATGACTTTTGATAAAATTGCTCATCTTAACTTTACAGAGCAATCGAACAGAACTTCAGAGCTAAATAATGATGCTACACAAAAGGCAACAACGACTGCAACCATGGCAACCACAGAACCGCCTACTACGATTATCGAGCAAACTGCTGCTGACAAGCAATTTATCGATTCTGGGAACTATTCATCCACAGAGCAGACCACGACCGAAGAGAGCTTAACAACTAAACAGGTGATCGTGATAAACTATAATGGTACTGTTTTGCCTACTAACCCTAGAGTAACCAAAAGCACAATGTCACCCGCACTTGAAGGAACAGATAAAATGGGCAATCGCACATCAGAGTACATGACATGGAGTCATTGGACACCTTGCTCTCGTACTTGTGGCTTGGGTTTCAAAGTTCGCGCAAGGCTCTGCAAACAGAGCAACGACAGTGTTTGTTCTAGGAATGAAACGCAGGTCGCTCTTTGTACCATCAGACAGTGCGAGAAGATATTTCCGTCGTGGTCACCATGGAGACCTTGGACTGAGTGTAGCTCACAATGTGGAATAGGACTGCGAATAAGAGTTCGTACATGTCGTaattccaaagttatgacgctgatTAGGACTAGTTGTCCTGGTCGAAGATATGATATAGAGATTTGTAGGTCGTTTGACAATTGTTCATCGAAAGTAAACATGGCGAAGCAAAGCACTATATTCATTACTCTCTGTAACTCCAAAGGCATCGCTCTTTCATACTACAACAACAGCTAG

Transcript

EGACTEQ4350046301-PA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMM2	ADAMTS-like protein 5 OS=Homo sapiens OX=9606 GN=ADAMTSL5 PE=1 SV=3
Q9UKP5	A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens OX=9606 GN=ADAMTS6 PE=1 SV=2
Q868Z9	Papilin OS=Drosophila melanogaster OX=7227 GN=Ppn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000429 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EGACTEQ4350046301-PA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →