Genomic Location: WHPX01000209.1:107624...144035
NR annotation: XP_031566485.1, unconventional myosin-Ia-like isoform X4 [Actinia tenebrosa]
Species Actinia equina · all data for this species · gene families
EGACTEQ4350047137-PF in AEQUI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P46735 | Unconventional myosin-Ib OS=Mus musculus OX=10090 GN=Myo1b PE=1 SV=3 |
| Q05096 | Unconventional myosin-Ib OS=Rattus norvegicus OX=10116 GN=Myo1b PE=1 SV=1 |
| O43795 | Unconventional myosin-Ib OS=Homo sapiens OX=9606 GN=MYO1B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000479 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06017 all species → | Myosin_TH1 | Unconventional myosin tail, actin- and lipid-binding | Domain | Interproscan |
| PF00063 all species → | Myosin_head | Myosin head (motor domain) | Domain | Interproscan |
| PF00612 all species → | IQ | IQ calmodulin-binding motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036072 all species → | Domain | Class I myosin, motor domain | Interproscan |
| IPR010926 all species → | Domain | Class I myosin tail homology domain | Interproscan |
| IPR001609 all species → | Domain | Myosin head, motor domain | Interproscan |
| IPR036961 all species → | Homologous_superfamily | Kinesin motor domain superfamily | Interproscan |
| IPR000048 all species → | Binding_site | IQ motif, EF-hand binding site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13140 all species → | MYOSIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000146 all species → | Molecular Function | microfilament motor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005902 all species → | Cellular Component | microvillus | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0015629 all species → | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0030050 all species → | Biological Process | vesicle transport along actin filament | Interproscan |
| GO:0031982 all species → | Cellular Component | vesicle | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0003774 all species → | Molecular Function | cytoskeletal motor activity | Interproscan |
| GO:0016459 all species → | Cellular Component | myosin complex | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10356 | MYO1; myosin I | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia equina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia equina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
