Detailed information of EGACTEQ4350047461-PB in Actinia equina

Genomic Location: WHPX01000714.1:528257...552114
NR annotation: KXJ12692.1, Protein SMG8 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q0VA04Nonsense-mediated mRNA decay factor SMG8 OS=Xenopus tropicalis OX=8364 GN=smg8 PE=2 SV=1
Q8VE18Nonsense-mediated mRNA decay factor SMG8 OS=Mus musculus OX=10090 GN=Smg8 PE=1 SV=1
A1A4J7Nonsense-mediated mRNA decay factor SMG8 OS=Bos taurus OX=9913 GN=SMG8 PE=2 SV=2
Gene familySubfamily
Transcription Factors FamilyP53

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00870P53P53 DNA-binding domainDomainInterproscan
PF07710P53_tetramerP53 tetramerisation motifMotifInterproscan
PF10220Smg8_Smg9Smg8_Smg9 FamilyInterproscan
PF07648Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036058Homologous_superfamilyKazal domain superfamilyInterproscan
IPR011615Domainp53, DNA-binding domainInterproscan
IPR037221Homologous_superfamilyH-type lectin domain superfamilyInterproscan
IPR012346Homologous_superfamilyp53/RUNT-type transcription factor, DNA-binding domain superfamilyInterproscan
IPR002117Familyp53 tumour suppressor familyInterproscan
IPR010991Domainp53, tetramerisation domainInterproscan
IPR002350DomainKazal domainInterproscan
IPR036674Homologous_superfamilyp53-like tetramerisation domain superfamilyInterproscan
IPR019354FamilyNonsense-mediated mRNA decay factor SMG8-likeInterproscan
IPR008967Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13091AMPLIFIED IN BREAST CANCER 2-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006915Biological Processapoptotic processInterproscan
GO:0051262Biological Processprotein tetramerizationInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan

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