Gene detail

Detailed information of EGACTEQ4350047753-PA in Actinia equina

Genomic Location: WHPX01000935.1:174052...180304
NR annotation: XP_031560564.1, uncharacterized protein LOC116296651 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350047753-PA

ATGGTCACAAGAAATCCATGTCTACATCCGGGAGATGTCAGGAAGCTGGTTGCCGTGGATACGCCTCAATTAAGACATCTTGTAGACTGTGTTGTTTTCCCCAGTGTTGGGCCTAGGCCGCATCCGAGCGAGATGGCAGgCGGAGACCTCGATGGAGATCTTTACTTCGTCAGTTGGCACCAAGATCTCTTCTCACATCCAGAAAAAGATCTCTTCCCACCAATGGATTACACAGCACCCcaaaaaaaactctctccatTCGACATCACCCCAGCCGACATGACAAGCTTTATCATGGACTACATACGAAGTGATCAACTTGGGGTCATCGATAATGCACACAAGGCGCACGCAGATTGTCAGGCCCAAGGAGTTGAGTCAGAAACGTGCTTATTATTGGCTGAAGCTCATTCGTTAGCAGTAGACGCGCCTAAGACTGGGGTTTGGCCTGACGCTAAGTCATTAAAGTTACGTCTAGAACAGTATCCTGACTTCATGATGAAGACAGACAAGCCAAGTTACAAGTCGAATAAATTGTTAGGTAAGCTCTATCGTGCTTGCCGTGCCTTTAAAAGAAACGCTGAGCATAGTCTTCCGACTGACATCCAAAGACCTGTGGTTGACCGCGCCTTTGTTGTCCAGGGTTACAAGAAGTATGTTAAGGAGGCTCGTGACTTATACTCGGAGTACAGCGAGAATTTGGATAGGTTGATGACCATATATGGTATTAACACGGAAGCCGAATTGGTATCGGGATGTTTTCGGAAACTGCACAAGCGTCTTAGCAGAGAACGCACTGAAGTCGCCGAAATCGTGGAGAGACTCGTTAACGACGTCCGGATGAAGTTTAGAAGGCGATTTTTCGAGGAATTTAAAATGGATACATCAAGACACAAGGCAGAAAACCTTCAAGTCATTGAATTGCAACGAAAGGGCTCTGCTTGGTACCACGTAGCATATGCCGAAGCGCCCAGTACTCCTCGTGGAGGTCCAAAACCCACACGGTTTCTAAGCTTTCCCTGGGtagttgatgacgtcatggcgaGCATCCGGGAACAAAAGAAAACTGTTTTAGCCTGTAGTTTTTCTGCTGCGCAGCAAAGCGTTGTTCCGAGTGGTTTCGCTCAAGACGTCAGTGAGATTCACTTCAAGGGACCGAAAGTGGACGCTATATCGAGGGACTTAATGAAGCGTCTAGAAGAGGACAAGGAAATGTTGCTGCAACAATACAAACGCCGCCTCAGTGGAAGAAACCTTGTCGCTCAGTCAATTCAGAAGGTGTACAGGGGTTGGAATGTGGCGGTGTTTGGATCTACTGCGACGTTGCTGTTTCGCGAAAATTCCGACGTGGATTTGTGCGTGTACGAGACAACgtggaaaaaccctcgaagcagtAGCAAGAAGGGACAGCTAAAGCTATTGAAGTCCTTGACACCATTGATGGGGAAGATGTTTAAGAGTACACGGCTTGTTGCTAGAGCTAAAGTACCGGTTATCTGCTGTAAGAATTTCAAGAATAAACAAGCCCCGCCCTTGTCTCTTGAAGTCCCCTTCGATCTGAGCGCCTCGAGAGATGGTCTGGATAAAGCAATCGTCGTTTCTTACTACATCATGTCCGAACCACCCCTGCTTCCAATCCTACGCTTTCTTCTCCTGTGGGGTCACAAGTCTGGTTTGACGGGTCACGGCAAAAGAATATGTGTCAACACCAACGCCCTTGTGTTTATATTCCTGAGCCACTGTTTGGGTAATGGGTGCGTGAATGAGCTGAGTGGAGACGTAGTGAGACATTTCTATGACAAGAACAGAGATCGGAAATCTGTAAATCAACTTCAAGACTGGGAGAATATCCTAGAAGGGTTGGTAGGTTCTAGCCGCGTTGGTGAAAACCAACCAAATCTACGAGGATTTTCTCCTGGGGAGGTGTTAATCGAGTTCTTTGCCAGCCATACTTCACTCGATCGACTTAGAATACCAGAAAGTATTTCACGCTTGGTTAATGCAAAGTGCGTCCAAGATCTCCTCAAGTCTTGCTCAATAAGCTTTCTCCAGGAGCAAATGCAGCGCGCATATCATTTGCTCGCTGTCCATGGAGATCTGGAAACTCTCTTGAACCTGTGTGAAACCGAAGTTCGTGAAACTATTCATCTATCAACCGGACTCTCCGCAGCAATGCGAGGAGCTGAAAGAGAGAACgctcatgaaattcaagaacGAACCGGTGCTAAAGTCAGTATCCGGCGGAAGTTCCAGAGTTTTATTTATCGGTTGATTGTCGAAGCCAGAGGGACGGAGCTACAGGTTGAAGCTGTTGAACATCTTGTGCAGGATATGACTCGTACGACTAGTGCGATGAGGGCCGCGTTTATGTCCATGTGCTTTGTTAAGGGCGCTAGCCAAATTTTGTTTGAAGGTTACCGTGACGATGACGACGTAGTCACGCTTGTCCCATATCACTCTTGCCACCACCCTCAGCACGATGGATCCCGTCTCTACACCCCTATGCTGGCCACCCCCATGCGCGTTAGTCCCGAGGACGCTCTGAGCCTCAAGGGTAGAGAGTTTGCTGAATTCCGACGAAAGTTTCTCACCCAGTTCGCACTGGCTGCCAAAGAACACGAACCTGCACTGCACGGTGAAATGGAGTTCGCTGTACGGTTTGGCCGTATCTATATCTTTCGAGTCCCAAAGTCCTTTATTGAAGATGCTGAATCTGTTACGGTACAAATGCTGCAGGCGAATCTTAAGCGTGGTTATAAGGCCAAGCCAACGGGCACTAAGAAGCCTAAACGTGAACTAGTTGTCACGAATTCTGGCGTGACAAGACGAAATACCAGGTCACGCggaaaaaaacagaaaccaaaaaagaaaaaggagaaagaaaaaaagatgcaAGAAAAGCCATGTCGCAGCTCGTACTTCACGGTTATTAAATCCAAGGAAAAAGTGGAAAAGTTCCTCATCAAAAGTGGATTTATCGAAGTGGCTTCCTTTGTAGTGTACGACGTAAACACGAAAGGAAATGAAGAACTGAATGTGAAGTTTGACGAGGATCTAAACTTCACCGAGCTTTGCTTTCCGTCCCTTCGTTGGTACCTTACTGATGTTAAACGAAGGTGGAAAAAAAGTCAACAGCAGAAAACCCAAGATGGCGACGAGAGCGATGTTCGGTTCATCCTTCAGTCGCGTCGCTCTTTGAATCAACAAGAAATTCAGGACACAGAGTACGAAGTTTATCAAGAGCTCATGCAAAAGCCAAGCCAGGCTGTTCCCGCAACGAAACCAACCAAGAAGCAAAAACGCATGTTTTCTATTAAAGACGATCTCTGGAATGAAGTCAGCATGGTCAGGCACAAGAAAACTCGGCTGTTTCGCAGCGAGCAAGATGATGATCCGTTTCTGTCGCTTGCCACCGTGGAGCTCAAGGAAGTAACGGAACATTCGCGTCCGATGACCGAGTGCTCTTGCTTTCGTAAGAATTTTACGCGCCATGAGCTTGACATTCAGTTAGATACACCTTCCTTATCGACGAGCGAAGGAGAGCTGTCTGTGTTTTTAGAGAGAATTTGGCAGTTAGCTTTCgaaatttcaacttttttgtCTAGTTGCTAA

Transcript

EGACTEQ4350047753-PA

Protein

Uniprot

Uniprot term	Description
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q9SG02	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan