Gene detail

Detailed information of EGACTEQ4350047810-PA in Actinia equina

Genomic Location: WHPX01000107.1:507591...520825
NR annotation: XP_031562522.1, cdc42-interacting protein 4 homolog [Actinia tenebrosa]
Species abbreviation AEQUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

EGACTEQ4350047810-PA

TCTACGCCGGACCACGCCCACATCGCGCGCAGGTTCTGAGGGCTCGCAATGAgttgtgggtttcctgtttGGACAAGAATCGAATAGTTCCATTGCGGAATGTAGTGGATCGGTATAAACCTTTGTTATTACTCTTGTACTGGATCGATCGCCGTGATTCTTTGCTGTATGAAACATTATGAATTGGGGAAATGAGTTGTGGgACCAGTTTGAATTAATTGGAAGTCATACTCTATCTGGGATTGATTTTGTGGATAAGGTTGCCAAGTTCGTGAAAGAAAGGATACGAATCGAAGCAGAATATGCCAAGGAATTAAGAAAACTTGGAAAGTCTTTTCAGCCTaagaagaaagaggaagaggACCAAAAattttcattTCAACTTTCTTTTAATGGAGTCGTGAAGGAGACTGATGATCTAGCCGGGCAGCACGAGTTGATTTCTGAAAATCTGAATAGCAATGTTTACAAAGTTCTTCAGCAACTTCATGCAGATctcaaaaaggaaagaaaagagcatTTAGCAGAAGCAAAGAAGGTGCAAGATGCTTTGGACCAGTCCCTAAAGGCACTTGATGCAACTAAAAAAAGTTATGAGAGAGCAAGTGCTGATGCAGAACAGGCATTTTCTTTATTCCAAAAGGCAGATGGAGATATGAGTATGACAAAGTTACAAGTTGAAAAGTTTAAATTAACCTCAATTGAGAAAGGCCAGGCCAAGGATAAAGCTGTAGAAGAATACAAAAGCCAGCtggacaaaacaaacaacaaacaaactctacaTTATACCACAGAAATGCCTGCTGTTTATAATCAATTGCAAACTATGGAGGAAAACAGAATAGCTAAAATAGGATCATTACTGACAGAATATTCAGATATCCATTGTTCAGTCATGTCCATTATACAAACATGTCTAAACAACATGAAATCAAATGCAGCATCAGTCGATGGACCCAAGGACTCACAAAAACTGATTGAAGAACACAGTACAGCCCTCAAACCACCTGGGGACATAGTGTTTGAAGAGTATGGAAAAAGCACTCCGCACACCCCACacactaaagaaaagaaaaagaaattgaaaattaaatcaaaatcaCTGTTTAGCAAATCTAAAAAGTCCGACACTGAGGATGGCAATGATTTCAACTCTCTGCCACCAGGCGAGCAAGCTAGAATTTGTAAGAACAAAATCAAAAGTTTAGATCCTCAAGTTCAACAGTTGAAGTCTGCAAGGGAGGCCATGGAAAAGATGACAGGTGTGTACCTCCAGAACCCTTCTCTTGGTGATCCAGCATCTATGGAGGAAGAGCTCAAAGGAAATGCCAAAGAACTGGATAAATATAGTCAGGAATTGTTTAAGTATCAGTCTTACTTAGCCATAATAGAACAAACTCCCGCTCCTGCTCCTCCACCGTGCTATTCGAAGCCCTCAAATGTGCAGCCTCCGCCAGCCCCGTCGGATAATGTCCCACCTCCAGCACCTAGTATATTGGTTCCCCCTGTCGAAGAACCTGAAGAAGATAACGAATTTGATGACGGGGAGAGGTGTAGAGTGCTGTATGACTTTGAAGGTACTAATGACGGAGAGCTCCCCGTACGTGAAAATGAAGAGCTAGTCGTCACCGAAGCTGACAACGACGGTAGTGGATGGACCAAAGTCACCAATGGCACCGACGAAGGATACGTACCGACGGCGTACGTAATGATGATAGAATAAATACCTACCACACttataactttaaaaaaataattaccgAATAGCCAAGTTGCTGTGTTCGTGAGAAACGAAACTGGAGCTGTTTCGAAAGTCTGCGCTAACAAAGTTAACGAAGtttgaagagaaaaaatgaattttttcaaaaattatgttATTTTAAAGATTAATATACTGGTAGGAAAATTCGGTCGAAAAAACGTTTTGGCATTTGAAGTGAAAAGCGAGAATCTTAAACTTAAGCTGgtaattttatatttcactttcggcattctttttatttttattattattttgtctcgTTTTGAGCTCTTCATCTCGCtgcttctctctctctctctctacctCTCTCTCTAGGTTCAGATTTCATCTCAAAACAAATACTATGGACCCTTCTAAAAActgtcttgaatgcgaggctaacatggaaatgaaaaaaaaaaagcccaCAAATTCCATCAGGAAAAgatgtgatttcttttgtattttcatgttagccccGACAACTTTGAGAAGTGTCCATTAAAAGGCCTTTCATAAACAAATGATATAGATTTTGTTGTACCATTGCTAGCTCTGTCATTCGCCTGCCAGAGGTTTTATTGAGAGAGATACTAGTAACGACTTCGTGGTGCAAAGGACTATGGGACTGATTTTGGGAGAGGAAATGACGAAGCATTCGTGCCGtatttttctaatattcctTTAGAATGCATTCATTTTAACACAGACATTTACGATTTTCAGCAATTGctgtctgttccatgctgtatatcaaaacATATTTTAGCTTGTCTGACATAGCAACAGTCACTAGggaggtagaacaatgaatgcggCATCAGTGTCGTGTATTACCCCAGTTTTAGCGGATTGGGGATGACATCTTGGGGAATAAACATGGCAGACTCAATGAAAGTCCATGGCTATATCAACAAATTCATTCCCACAGTTCTTTGCGCCACGAAAGCGTTACCAATCCTCCTTTGAGGTTTTTGAGGGGCAGATTGAACAATTCAGAGCTAGATTGGGTTGACAAATGATAGAGTAAAAGCAAAAAGTACACAAAACACTTATAGATGCCTAATAATTATAGAAATTATAGAAATTTTTCTTCTGTTGAATTTAATTTCGGTTGTCGGTAGAGTATAGAATATCGAAATATGAAGACTGAAGAATTAGACAAACCTAATGAAAGTAGAATACCAGATGTTGAAATGTGTTGTAAtagttaatattattaaataataatcttCCTgaagaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCZ7	Formin-binding protein 1-like OS=Xenopus laevis OX=8355 GN=fnbp1l PE=1 SV=1
Q6GUF4	Formin-binding protein 1-like OS=Xenopus tropicalis OX=8364 GN=fnbp1l PE=1 SV=1
Q96RU3	Formin-binding protein 1 OS=Homo sapiens OX=9606 GN=FNBP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005988 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15735 all species →	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20121	FNBP1; formin-binding protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.