Gene detail

Detailed information of EGACTEQ4350049901-PA in Actinia equina

Genomic Location: WHPX01000713.1:135415...146846
NR annotation: XP_031565468.1, TNFAIP3-interacting protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350049901-PA

ATGGCACTTATCGCTGAGGAACAGACCAAACTACTGGAGGAAATAAGTAGACTAAAACGAGAAAAGAAAACCCTTAATGTGAGACTACAAGGAGTTGGAGTTTTAGcaaaagttCTTCAAGAATCTCAAGATGAAAACTTAAAATTAAGGCAAGAAGTTTCTGAGTTGAAGGGTGAACTAGAAGGCACAAGTGTTATCATCTCACCATCAGCATTATCGCTACAAACTACTCCAAGTATGGATGCAGAAGGAAGGTGTTTCTTGTCACAGTCTGAGAACAATTATTCATTGAGTCTTTCTGAGTCCTCTTATGAGTACGTAAACTACATTCTCCAAGAAGCACCATTGACCTCAGGAATTCCACACTGTGATCTTCATATCAAGGAATTGAGCTCTGGATTCAAAACGATCAAAAATGAGTCAGATGTTCTTTTGGGAGAGGCCAAAAGCCTATTAGAGCTAACAGGAAATGTAAAGGACAGAAATGAAAGTGCAGATTTGGCATCCAAAGTATCTACTATAGTCAAGAGGATAGGACACCATGCAAGAGATGTAAAAACCAGAGAAACATTTCTTCAAGGACTGGCTAACGAGGAAGAACAGTTGAAAGAGAAATTCATGGCCATGGAAATGGAGCAGGTTTCCCAGGAGAAGGTGATGGAAGATCTTAAAGTACAACTGAAAGGTGACAAGGAAGAGATAGAGAGCATTAGAGAGCAAATCAAGCTTTTGGGAGAAGCAGTCTttgtaaataaagaagaaaCCAGTTCTATTGAAAGCTATTCATCGAGTGAAACAGCATCGAATACCAGTCAAATGTCATCCTTGTCAAAGCTcagttcaaaagaaaaagaacttggAGAATTGGAAACACCACATGCTTGTCATGGTCAATGTTCTGAGTTGAAACGACAAATTAAACAATTAAAACGGGAAATAGGAGAACTCATTCGTCAGAAGGAAGAGATCCTTGATGTTAACCATGCGTGGGATGCGCAGTACAAGAAGTTGAAAACAGAGACAGGCAAAGAGATTGCTGATCTCAAGCATCAAATACATTTGATTAAAGAATCGGAAATGTGGAAATCGGCAAGTAGTATCATTGAACAAGAACGACAAATGAATCAACAAGCATTGGAAGAGAAAAACAAACTTGAAGAGAAGTGCAAAGAACTCCAAGAAAAGCTGAACAGACTTCCCGTTCAAAAGAGATACGAACTGCAACAAGAATATACACCACTACAACAGacTCCAGGCCCATTTTCCCGGCTGAGTTTGCCATCATCCCTGATCAGTAATCAAAAGTTGTCAACAAGTAGCCAATCAGCAACTTCGCCTGAAGAACCACCACAAGATATGATTAAAGAGATAGAAGTTCTCAAGCAACAGTTGCGTGTTTATGCTGATGACTTTGCATGCGAGAGACAAGACAGAGAGAGGATGCAAAACGAAAAAGCAACTTTGGAAACTGAAGTTAGGAACTTGAAGGAAGAAGTATCTGTCTTGAGAGAACagGTTCGCCTTTACGAAGAAGACTTCaagaaagaaagtgaagaaaaagaTCGCTTGAAACGTCAATTGAATTTCCAAAGAGAGggTTCTGACCCTGAAACCAGATTAGGTGACATGACAAGAAAGGCACAAGCAGTCGCTGAACGTCAAGCAAGACTTCGAGCCTTGAGAGACCAATACAACAGAGAAGAACGACATCTGATGCAAGACCAACAAGACTTACAACAAAGAGCACGTGTGATTGCAATTCAATCAGAGCTTCAAAACCCTCTTCATGAAGTTTATTTGCCTCGCCAGTCCTACCGTCAAGACATTCATCCAAGAGGACCATCAGAGTCCCAGAGATCATCAAATGACATGTTCCATGGCGGTGATGTACAAGCAGACAGTAGAGACTTACTGGGTCAAGAGGTTATTGATGGTGTAGGGAAAGAGTACTGCTGTCCGAGATGTTTCCGTTTGTTCCCAAAAGATGATGAAAAGTCTTATAAGAAACACACAATGAAATGTATTGAATAA

Transcript

EGACTEQ4350049901-PA

ATTTCGTCCGCCATAAACGGTTAACGCGTTTTTCGTTTACTGTCGTACAAGTCGCCGTATGCTGTCGAAAACTCAGATATTCTCACCACCAATTGCACAAAAATAGTTTGATTAATGAactatttgttgttgttttttaatttgaatCGTTTTACGTGTGATTGCAAGTTGAAATTCCTTTTCAAAAACAGAGGGGAAAATCTGAGCTGCGACGTGAAAGATATGGCTTACTAGACTCTCTAGGACTTTGTCGATAGAAATATCAAAACCAGACGAACACGGAATGGCACTTATCGCTGAGGAACAGACCAAACTACTGGAGGAAATAAGTAGACTAAAACGAGAAAAGAAAACCCTTAATGTGAGACTACAAGGAGTTGGAGTTTTAGcaaaagttCTTCAAGAATCTCAAGATGAAAACTTAAAATTAAGGCAAGAAGTTTCTGAGTTGAAGGGTGAACTAGAAGGCACAAGTGTTATCATCTCACCATCAGCATTATCGCTACAAACTACTCCAAGTATGGATGCAGAAGGAAGGTGTTTCTTGTCACAGTCTGAGAACAATTATTCATTGAGTCTTTCTGAGTCCTCTTATGAGTACGTAAACTACATTCTCCAAGAAGCACCATTGACCTCAGGAATTCCACACTGTGATCTTCATATCAAGGAATTGAGCTCTGGATTCAAAACGATCAAAAATGAGTCAGATGTTCTTTTGGGAGAGGCCAAAAGCCTATTAGAGCTAACAGGAAATGTAAAGGACAGAAATGAAAGTGCAGATTTGGCATCCAAAGTATCTACTATAGTCAAGAGGATAGGACACCATGCAAGAGATGTAAAAACCAGAGAAACATTTCTTCAAGGACTGGCTAACGAGGAAGAACAGTTGAAAGAGAAATTCATGGCCATGGAAATGGAGCAGGTTTCCCAGGAGAAGGTGATGGAAGATCTTAAAGTACAACTGAAAGGTGACAAGGAAGAGATAGAGAGCATTAGAGAGCAAATCAAGCTTTTGGGAGAAGCAGTCTttgtaaataaagaagaaaCCAGTTCTATTGAAAGCTATTCATCGAGTGAAACAGCATCGAATACCAGTCAAATGTCATCCTTGTCAAAGCTcagttcaaaagaaaaagaacttggAGAATTGGAAACACCACATGCTTGTCATGGTCAATGTTCTGAGTTGAAACGACAAATTAAACAATTAAAACGGGAAATAGGAGAACTCATTCGTCAGAAGGAAGAGATCCTTGATGTTAACCATGCGTGGGATGCGCAGTACAAGAAGTTGAAAACAGAGACAGGCAAAGAGATTGCTGATCTCAAGCATCAAATACATTTGATTAAAGAATCGGAAATGTGGAAATCGGCAAGTAGTATCATTGAACAAGAACGACAAATGAATCAACAAGCATTGGAAGAGAAAAACAAACTTGAAGAGAAGTGCAAAGAACTCCAAGAAAAGCTGAACAGACTTCCCGTTCAAAAGAGATACGAACTGCAACAAGAATATACACCACTACAACAGacTCCAGGCCCATTTTCCCGGCTGAGTTTGCCATCATCCCTGATCAGTAATCAAAAGTTGTCAACAAGTAGCCAATCAGCAACTTCGCCTGAAGAACCACCACAAGATATGATTAAAGAGATAGAAGTTCTCAAGCAACAGTTGCGTGTTTATGCTGATGACTTTGCATGCGAGAGACAAGACAGAGAGAGGATGCAAAACGAAAAAGCAACTTTGGAAACTGAAGTTAGGAACTTGAAGGAAGAAGTATCTGTCTTGAGAGAACagGTTCGCCTTTACGAAGAAGACTTCaagaaagaaagtgaagaaaaagaTCGCTTGAAACGTCAATTGAATTTCCAAAGAGAGggTTCTGACCCTGAAACCAGATTAGGTGACATGACAAGAAAGGCACAAGCAGTCGCTGAACGTCAAGCAAGACTTCGAGCCTTGAGAGACCAATACAACAGAGAAGAACGACATCTGATGCAAGACCAACAAGACTTACAACAAAGAGCACGTGTGATTGCAATTCAATCAGAGCTTCAAAACCCTCTTCATGAAGTTTATTTGCCTCGCCAGTCCTACCGTCAAGACATTCATCCAAGAGGACCATCAGAGTCCCAGAGATCATCAAATGACATGTTCCATGGCGGTGATGTACAAGCAGACAGTAGAGACTTACTGGGTCAAGAGGTTATTGATGGTGTAGGGAAAGAGTACTGCTGTCCGAGATGTTTCCGTTTGTTCCCAAAAGATGATGAAAAGTCTTATAAGAAACACACAATGAAATGTATTGAATAAACCCTTGCCGATATCACAGCATCATGCTTTTAATACAGGcactttaattaaaaacatgttttattatCAGAATTAAAGtatatatgacacgaaaaaaattttgTGAAACAtttgtagtttattggcattaataaaaatgtcacggttaaatttgtttcaaatacgtatttctctagaaattcaaggaAATTTAGCACAAGTGGTGACGTCATATTGTTTACAAGTCAGTCttcagatttagttgcaaatatacgaaatattattgaatgtagaatcttaatttaaGGTAGTAAGTACACTTTTtagtttcccaacattggaagaaTACTATGTAAACTATTAAAacaagctgaatagaatatgccttgtGTTATTTCATACGAATTACAATtcatatttagtgcattactaccgaaaCTAGAagtacgtgtcaacaaaatga

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBAN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16516	CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032419	Domain	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31882	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan