Gene detail

Detailed information of EGACTEQ4350051990-PA in Actinia equina

Genomic Location: WHPX01001101.1:72684...74678
NR annotation: XP_031561520.1, tripartite motif-containing protein 3-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350051990-PA

ATGGAATCTTTCCTGGAAGATCTGAAGAAGCACGTCCAATGCTCCTTGTGTAATGATACACTTACAGAACCGAAGATTCTTCCATGTTTCCATACATTTTGTAAGCCTTGCGTCGGAAGACACGCCGAGCTCATCGACCAAGTCAACGTCTTCAAGTGTCCTCGATGCAAATCACAAATTCATCTTCCAGAACCAAACAGCGTGGAAGATCTACAGCCAAGTTCACTGCATTCAAGAATCTTGAAGGGTCTGGCGTTGGCAAAGGGAGAAAAGGTTTGCTCTGTTTCTGAGAGTCATTCTCCAGCatcttggtattgttttgaaTGCGATCATTCACTGTGTCAAGAATGCAAGAAGAACCATTCTTACTTCATCAAAGATCACAAGGTCGTTTGCCTGGctgatttgaagaaagaagatattGAGTTCATAACAACAAGAGAAAATCCTTGTAAAAGTCACCCTCAGCACAGGCTAGAGTTGTTCTGTGAAGACTGTGATGACATGATTTGTGTGACATGCTGGAAACACGATCACAAGGATCATAAGACGATGTCATTAGATAAGTTTGCTTCGATCAAGAAAGATGTATTGTCAAAGCATCTGCAAGTACTAGAGCAGTTGAAATTAGATGAAAAGGAACTACAGCAACAAGAAAAAATCGCTAAAACTATCAAACAACAAGGAGAAAAAGCAAGACATGAAGTGAAGGAAAAGACCAAGAAAATGATCCAAATTCTACAAGAAAATGAACGAGAACTACTCAGACAAATAGACGAGAAGTTCGGCACAGCCACAACAAACTTGAATATAATTCCCCATATTCCAGCAGTCGAGGAATACATCAGGAATATGATGGAAAAAGGACTGGCAAGTGAAATGATGAAGATTCAAGAGACACAGTGCTCGGAGAAATTCATCTTCAACCCAATTCCACTGTCATCAAGAATTGTCTTTATTCCTAACCAAGAGCTGGTGCAACAAGTAAATACAGGTCTTGGAGAAATACAGACGCATTCTGAAACAGATGACGATGACGTGGAAATAGAAGGAAAAGTAGAAGTAGATAGTCAACtgacagcagaggttcaagtgaatgaGAATCATGTATCTAATGTGAAGCCTCAACAGATGAGAGTAACAGATTGGTTTCAAATGAATGTGCAGACGAATATTTACGATCATTTAACAGGTATGATAGCAGTGAACAGGGACAACAGCAGGCTCGCTATAGGAGCTAGATACGCATGTGCTACCAATAAGTCCTATGACCCTTCAAGATATTATTGCGAAGTCCACATATTTAAGACTAATGGAGATCTCTTAATGACTTGTAAAGATAGTGTGCAGGAATATGGTTTTGGTCCCGACAGTTTAGCATTCCTGAATgatacagatttagtcatagCAGACAAAGATAATCGAAGAATATGTATAGTCAACACTATAACAGGGAATTTGTTCAAAACTTTTGGTAACCAAGGTGCCATACATGACGAGTTTTCTTATCCATATGGAGTACACGTTGATGACGATAGTAACATCATTGTGTGTGATCGTGACAATCATCGTGTTCGTGTCTTCACAAGAGATGGTGATTATAaatatcagtttggtttgacAAGAAAGGACTACTTTGATCCGGTTGACGTGATAACACATGATGGACGGTTTTACGTAAGTGATCATTATAATCATgttattcatgtatttgagaAGAAAGGTAAAGTACTGACTAGAATATCAACGATTGGTGGATACGGCAGTGATGATGGTCAGCTGAGTAGACCATCGGGcctggctattgataatgaccatcatctaCTAGTGTGTGATTCTGGTAATAATCGTGTCCAGAAATTCACCCTGGATGGTCGTTTTGCTGGCAAGACAGTCACCGAGGATAATATCTGCAATCCTGTTTCTATCGCAGCGTTGAATGATGGTCAGATATTAGTCTGCATGGCTAATCATGCCGTGCAGTTTGTCAAGtag

Transcript

EGACTEQ4350051990-PA

Protein

Uniprot

Uniprot term	Description
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1
Q03601	RING finger protein nhl-1 OS=Caenorhabditis elegans OX=6239 GN=nhl-1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan