Gene detail

Detailed information of ENSAPQP00000001064.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028393317.1, apoptotic protease-activating factor 1-like isoform X2 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000001245

AGAAGACCATCAGAAATGAAAGACATATTGAAACTACTTGCGGAAGGAAATAATCGAGTTGGTGTGCTCGGGAATCGTATCGGCGACGTCGTTGGTATTCGTGGTATGGGGGGTCTGGGTAAGACCATCTTAGCTCTAGCGGTCGCCTGGGAGGTGTCTGTTGCTCGTCAGGTAATATGGCTTGATGTCGGAGAAACTCCTGACTGCTTATCACTCATTAACCTGCTCATAAAAGTTCTTGGTGGCGAAGCCTCGTTCACTGATATCCGGGCAGCGCAATTCTGGGTCACAGCAAACACGAGTGACAAAGATTGCTTGGTGATtcttgatgatgtttggaatGTAGACCACGCTTCTGTGTTTGATCATCTCTCTGGAAAATGCCAATTATTGATAACTACAAGGAATTCTGAAGTTGTCCGCGGTTTACAAGGTTCTGCTTTGTACACACTCAACTATTTAAAACGGGATGATTCTTACCAGCTCTTGTATCAAACTGCCCTAGTCACCGAGGACGAGCGGTCTAAGTTTAGTTCAAACATGCGGCAAATTATAGAGGAACTGTTAAATCACTGCGGCGATCTACCGCTAGCTCTGTCCCTAGTGGGTTCAAGTTTAGCCGACTCTCGCGACGAACAAGACTGGGAAGACGTTTTAAATGACCTAAAAACAGCAGACTTGGCAAAATTACGTTCAGTATATCCCACCAACGCTTATCCTTACGATAACGTCTTAGCAGCCATTAACGCCAGCTTTCAACATTTGGACGAAGAAAAACGAGAAAAGTTTCTAGATTTCGCTTTATTTCCAGAAGATACGGATGTACCGTCAGACATTCTTGAGTTGTTTTGGTCTTCCAATTTACCCGGCAGAACTTCTTGTAAAGATCGTGAAGCAAGACGTATACTTGATGAGCTTGAAAAGAAGTCGATGATTCAAGGATCTGGTAAACATGGAAAGAAGAGCTACCGTCTCCACGATCTCCTTTTGGGTTTTGCACGTGCAACACTAGGAGGCAAACTAAGTTCTGTCCAAAGTTTGTTCGTGGAGGCACTTCGTGGTCATTGCGAGAACGGTGATTGGGGAAAATTTGAAGGCAACAAAGACtattatttcaagtacctGACCTATCACCTCCACTCCTCCAAACAATTTGATGAACTacataaactgttcttcaattttaactgGCTTTATGAAAAGGTGAATCGATTCGATCTCCCCTCCttaatatcagattttcgttttctggAGCCTCCATCGAAAGATATCGAACTGCTCAAGTCGTCGTTGATGCTGTCCTCGACGCTTATCGAGAGGAATTTGCATTCTATTGGTCCACAGCTGTTAGgtAGACTGCTATCTTATGAAGAGTATCCGGGGGTAAAGAGGCTGTTAGGGCAACTCCGTGCAACATGCACGGAGACTTGCCATCTTATACCGGAATTTTCCTGTCTGCATCTTGGAGCCCCTGAGACCTTTCGGAAAACGTTTGATTCAGGCGTATGCTCATTAGCAACGTCCAATACTCCATCCTCTATTGTTGTCATTTGTGGTTTATCTAATGgttcaatcacaatctttgatCTTGACACAGgcAGAGAAGTTCAACAACTACAGGGACATTCTCGGCACGTTAGCTGTTTGgctgtgtcacaaagtggaacaatACTAGCGTCAGGGTCGTTGGACGGAAGTACAATACTTTGGAGAATGGACAGTTATGAACAGCTCTTTGTGTTCCAAGGAGAGAGTGCAGTTAATGCCCTGGATTTCAGTGCCgatgatcagcgagtgtttattggaacagacgatgggttagacattattgaaGGCTGGTGACTTCAGTCTTCCAAACATTCACTGGGACTCTATGGCGAACACAACTGGTGTAGATGAACTCGTCTTCGTAAGGCTGTTGAATGATCACTGCTTATCTCAACTAAACAACACCCCGACACGAGGAAATAACATTCTAGACCTTGTTATAACAAACATGCCTGATCATGTCAGCCTAACCCAGATATTGTCTCCTGAGAAGAAACCTCCGTGTTCAAATATACGATCTCGTTCGATTTCTCGGCTTTTGTCAAACAACCAAGAAAATCAACAAGAACTGCATCATGACTATGCGAGGAGCGGCATGGACGCTCTGTGTGTTGCCTTACGAGAAATTGATTTGTCGTTAACCATGTCGGAGTCATCTGATGATATCAACATCGACTGGAAGCATTGGAAGGAAACTTATCTGTCTACCGTTTCGAAGCATGTACCAAAAAAAAAATCGAGCCCGGAACCCGCTGCCATGGATAAACGGCGATATTCTCCACCAGATCAAGAAAAAAGAGTGCATTCGAAGGAAATTGAAAACCAATCCCAACCTACATCTGCAAGAAAAATACAAGAAATTGCGTTCCGAAGTCAAACGATTACTTCGCGAAAGCCGTGAGAATTTCTTCTCCTCGATCAACGATAGCTTCGCAAACAACCCAAAACGCTTTTGGTCAGTGATGAAGCAGAAGTCAAAAAATTGCAGCATCCCAGATTGTATTTCCATGCCCGCACCTTCCATCTCCACTGACCAAGTTGATTCATCCTCGGCTCGACAGACAGCCACTAAACCTGCTGAAATAGCCGAAATGTTCAATACGTATTTCGCATCGGTGTTTACATCTCACGGCCTATCAGATCTATCTGAAGAATCAAATACAGACGCTCACATGACTGAACTAATTTTAAGCGAACTTGAAGTCGAAATCGTCCTTAAATCCCTCGATAAAGCAACCGGACCTGTTGAAATCCCAGCGAGACTACTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LVT1	Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana OX=3702 GN=At5g47280 PE=3 SV=1
P60838	Disease resistance protein SUMM2 OS=Arabidopsis thaliana OX=3702 GN=SUMM2 PE=1 SV=1
Q40392	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006398 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042197 all species →	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan
IPR044974 all species →	Family	Disease resistance protein, plants	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23155 all species →	DISEASE RESISTANCE PROTEIN RP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006952 all species →	Biological Process	defense response	Interproscan
GO:0098542 all species →	Biological Process	defense response to other organism	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03351	APC4, ANAPC4; anaphase-promoting complex subunit 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.