Gene detail

Detailed information of ENSAPQP00000001088.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977829.1, AP-1 complex subunit beta-1-like [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000001271

TTATTATCGTGTCGCTCTGAATCAGCAATCATGACCGACTCTAAGTATTTTACCACCACCAAAAAAGgtgaaatatttgaactaAAGGCAGAACTGAACAGTGAGAAAAAAGATAGGAAAAAGGAAGCAGTGAAAAAAGTGATTGCCAGTATGACAGTTGGAAAAGATGTTAGcaaaacaaaagcaaaatattccttttCATTATTTCCTGATGTTGTAAACTGTATGCAAACTGACAACTTGGAATTGAAGAAATTGGTTTATCTGTATCTCATGAATTATGCTAAATCTCAACCTGATATGGCTATCATGGCTGTTAATACTTTTGTCAAGGACTGTGATGATCCAAATCCACTGATTCGAGCATTGGCTGTGCGTACAATGGGTTGTATTAGGGTGGACAAGATCACAGAATATTTGTGTGAACctttaagaaaatgtttgaaagatgAAGATCCATATGTGAGGAAAACTGCAGCTGTTTGTGTGGCAAAACTTCATGATATCAATGCTCAATTAGTGGAAGACCAAGGATTTCTTGATCAGTTGAAAGAGTTGCTATCTGATTCAAATCCTATGGTGGTGGCAAATGCAGTAGCTGCCTTGAGTGAGATCAGTGATGTGTCGACATCAGCTGCTGAAGCTTTGGAGCTGAATTCTCAGACTGTGAACAAGTTGTGTACAGCACTGAATGAATTGATTTTTTCTATGAATCTGAATTTCAATCAAATATTTCTACATACAACCCTCGTGATGACAAGGAGTGTGTGTGAAAGAGTGACTCCAAGATTGTCCCATGCAAATGCCGCTGTTGTTCTCTCTGCTGTCAAGGTGCTCATGAAGTACATGGAAATTTTAGAGGGTTCTTCATTTACACAAAGTCTGATCAAGAAACTTGCTCCACCTTTAGTAACGTTATTGTCAAGTGAGCCAGAAGTACAGTATGTGGCACTGAGAAATATCAACTTGATTGTTCAAAAGAGACCAGAGATTTTAAGAAATGAGATGAAAGtgttttttgtgaaatataatgaTCCAATTTATGTAAAACTGGAGAAGTTGGACATTATGATTCGCCTGGCAAATCAGCAAAATATTGCACAGGTCTTGGCCGAACTTAAAGAgTATGCAACTGAAGTAGACGTTGATTTTGTAAGAAAATCTGTGAGAGCCATAGGCCGTTGTGCTATCAAAGTTGAGCAATCTGCTGAAAAGTGTGTTAGTACATTACTGGATCTCATTCAGACCAAAGTCAACTATGTTGTACAAGAAGCTATTGTGGTTATTAAGgatATTTTCCGTAAATATCCCAACAAATACGAAAGTATCATTTCTACATTGTGTGAAAACTTGGACTCTCTTGATGAATCTGAAGCAAGAGCGTCCATGATTTGGATAATTGGGGAGTATGCAGAGAGAATTGATAATGCCGCTGAACTTCTGGAGTCTTTTCTTGAAGGTTTTCAAGATGAAAATACACAGGTTCAATTGCAGCTGTTGACTGGTATTGTGAAACTGTTTCTTAAACGACCATCCGAAACTCAAGAATTGGTACAACAAGTGCTTAGTCTTGCAACACAAGATAGTGATAACCCAGATCTGCGAGATCGAGGTTACATTTACTGGAGATTGCTATCTACTGACCCTGCTGCTGCCAAGGAAGTAGTGTTGGCAGAGAAGCCTCTCATATCTGAAGACACTGACTTGCTGGAACCTACATTGTTGGATGAACTCATTTGCCATATCTCTTCCTTGGCTTCAGTTTATCATAAACCCCCCAGTGCATTCGTCGAAGGACGTACTAGTGCCCGTCGTTTTACTTTACCTGCAAGAGCAGAACCCACCCCTCCAAGTGGCCAGACTGAGGTCACACCACCTGCACCTCAACAGGCTACTGTTATTCCATCACATCCACCACAGGGAGATTCGTTGATTGGTGATTTAATTGGCATGGACTTTGGTGGTGGTATGCCCGCACAACCTGCCGCCCCCATGCCGCCTGCAGCCATGAGTAATCATAGTGGAGTTGATTTGTTAGGCGCTGATCTCGGTGGTTTGCAGATTGGTGGTGCTGTGAGTGGAGGTGGCGTGGCAGCTCCTCCAACTGCCGCATCTGGTGGTCTGGGTGATTTATTCAGTTTGTCGGGTGGAGCTGGACTTGCTGCTGGATATGTTGCTCCTAAAGCTGTTTGGTTACCAGCTGCCAAAGGCAAAGGCCTTGAAATTTCTGGGACGTTCTCTCGCCGTCAAGGACAGATTTTTATGGAATGTTCAATCACTAATCGAGCGATGCAAGCCATGGGAAGTTTTGCtgtacaatttaataaaaatagCTTCGGTCTCGTGCCTGGAGCCCAGTTACACGTGCCCAGTCCACTACCAGCCAACCAATCATCAGACACATCGTTGTTGCTCAACTCAACTGGGGCAATACAACGTATGGATCCTCTCACTAATCTTCAAGTCGCGgtcaaaaacaacattgatgTGTTCTACTTTAGTTGTATTGTACCAATGCATGTCCTATTTATCGAAGCTGGACAAATGGATCGTAAAGTTTTCTTAGCCATGTGGAAAGACATTCCCGCATCCAATGAAGttcaaaaacaatttcatTGTAATTTCGGTTCAGAAATGGCGCAACAAAAATTAGCTGCGAACAATGTGTTTACTGTTGCCAAACGTACAGTGGACGGACAGGATATGTTATATCAGTCATTGAAATTCACCAACAATATTTGGGTGCTTGCTGAACTCAAGATGGAACCTCATAATCCAAATGTTCAGgtaaaaattgtgttttattCTTGCGTGCAGGTAGTATACTGTTCCTTGTCTAGCGCGCGCGTACTATTAATTGCGCTAATTAGCATTTATTGCTTCATGATGCTTACATCATAA

Transcript

ENSAPQT00000001271

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10567	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=3
P63010	AP-2 complex subunit beta OS=Homo sapiens OX=9606 GN=AP2B1 PE=1 SV=1
Q9DBG3	AP-2 complex subunit beta OS=Mus musculus OX=10090 GN=Ap2b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09066 all species →	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR013037 all species →	Homologous_superfamily	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR015151 all species →	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000001088.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.