Gene detail

Detailed information of ENSAPQP00000001122.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: XP_028410575.1, protein cycle-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000001307

AGAACGTTGTTTATTAGTCAGAAAAATTATTGCCCAGCAAATAATTCGTAAAAGAGAATTCGTTTTCCACCTGGTGTTTctattgctgatatataacgTTGTATATGTAtcatatttgcaacatgaTCACAGTGTTTCAGGTGTCTTAATGATGTTTACAACATGATAGAGTTTTTTATTTACGAGGGAAAGAATCTTACAAGAGACAGAATGGTTTTACATATCCGGAAGTGCCAGAATATCGTTCGTAGCTTGTAAACTTCTTTCAGATTATGTCGAGTAATGAAGAACAATCACCAAaCTACATTGCTACAATGTCATCTCCAATGGAAGTTGTGGATAAAAAgAATTCTCATAGTGAGATCGAAAAACGACGGCGTGATAAGATGAACGAATGCATTAATGAGTTGTCCACCATGATTCCTTTACCACCATCCGTGGGTAAAAAGCCAGATAAACTGACGGTTTTAAAGTTTGCAGTTCAGCACATGAAAGTTTTGAAAGGTTCAACAGAACCTTTAAAAGAAACCGATCACAAGCCAAGTTTTGTATCAGACGATGACCTGCGGAACCTGATTACCGAGGCATCTGGTGGATTCATCATTGTTGTTGAGTGTGACCGTGGACAGGTTTTGTACGTCACTGATTCAGTTGAGGGTATACTGAATATATCGCAGGACGACATGGttggtttcaatttttacgagCTGGTCCACAGTAAGGATGTATCAATGGTGAAAACACAATTATTCACGACAGTGTCGGACAGCAAAGAGGAAAAGAGCGACCCCCAAAAAGTTCCTTTATTGAATGAACTGATTGAGAATTCAGGGGATTTATGTCCTGGAGCTAAGCGTTCTTTCCTTTGTCATATGAAGAAAGGTGGGAAACCTGAAGATAAAATTGGCATGGGAACAAAGACGTCTCTTAGGAAAAGCAAACCTGATGTGTTATTGAATGAAGGAGAATCTGTTTTAATTTCATACGAAGGTTATTTGAAATCATGGCCACCGAAGAAGGAAGCAAAATCAAGCAACGATCCCAACTCTCGTAGTTGTTTAGTCGCTGTAGGTCGGGTTCTGGAAATAGATAAAGAGCAAACCGACTACAGTAAGCTGGGACAGATATGTGAGTTTGAAACTAGACAACGAGCTGATGCAACATTCGTTCGTATTGATAAAAGTTTTACGAAGATATGTGGTTATTGTTCGGACGAAGTTGTCGGCAAATCAGCATATGATTTCTTTCATAAAGATGACCTGAAAATCGTAGCTGAAGCTCATTACAAGGCCCTCAACAACAAGTGTAGCTCACGACCAGAAGTGTTGTACAGGTTTCGCACGAAAGCTGGGCACTACATTCCCTTGAAGACGAAGTCAGTTGTACTTCGAAATCCTTGGTCAAAGGAGGTTGATTATCTTGTCACAAAGAATGTTGTTATAAGTGCCGTTTCATTCAACACGCAAAGAGGAACAGAGGAAATGACATCAAATGATTCCACTGAACAACAAGAAGAAATGAGCGAAAATCTTCGTAATTTGTTGGCCAAATTGGAAAACCAGGAAAACAATGAAACAAAATCCCAGAGAAAACGTGGGTTGAATACAAGCAGCAGTAAATCTGGAGACTCGCCAAAGATTGCCAGCCCCGCAGATATTGGCGTGATGCTAGCTGAAGAAGCTAAGAAAATGGGACATCAATTGAGAATTAGTTCTCAGTCTGCAAAATACTCAAACGTTGACAGACCAAAGGAAAGTGAACAAACTGTTTCGAATAGTTCGTCGAGTCCTCCACGTGGTGGCCACGCATTAGATAACTACAGACAAAGTAATGTCGAAGGAACTGATGATATACAAAGTGGAAATGAAGAGCAAAGTGATGGCATAATGATAGAGCAGTTGGCGGGTATCCAGGGAGCTATAGACGCAATGGAAAATACAGAAGTCAACGATGATGAGGATAGTTTGTCCCTGTTAATGAATGTTTTAGAAAGTGATGACTTAAGCACTGTTCTTAATGACATGCCGTGGAATTTAATGTGATAAGTCTTTCAAAGTCTTTCAAGCATATTTTGAACACAATGTATATAGtcttaaaattccttaaaaatagTATTGAATAATGTGGTGAGAAGGGGTAACCATCTACTACATTTTCAGATTAGATTAGCCGGGGGCAAAATAGGCATATGTGTGGTTGTGCGCATGTAAAATATCAGTTATCATCTTAGTTGCATGATAAAATCAACCAAAACCCAACGATCCTGAGTATAATGCGGGCAATGCCAAGTGTTTCTTTCATTCAGTTAGAATATAGTCGCCCATACAAGTGTGccaattgcaaatatttaaAAGTGACAATTGATCTTTTTAGTAttggaaattacacggttcgagaagtttcaatgaaaaaatgcatgcgtgtttggcgaaatacttGGCAAACGAAATGCTCGGCAAAAACAAGtgtaatttttctttaatacttccagaacaagtgtaatttcctataatatCATTGTGGTACATTCAGTACATTTCGATTGTTTATAAAAAATGCAACTTAAGTTTATTGCGGGAATTGGAACTGTTTttaatagaccttatgcataataGCGTTTTCTTAGGTTTTGTGACTAGTAGTAGCACAATACTTTACGAAAATCGTAATAGAAAACGTCTACGAATACTCGAAAAGCATTCACGTGT

Protein

Uniprot

Uniprot term	Description
Q9WTL8	Basic helix-loop-helix ARNT-like protein 1 OS=Mus musculus OX=10090 GN=Bmal1 PE=1 SV=2
O88529	Basic helix-loop-helix ARNT-like protein 1 OS=Mesocricetus auratus OX=10036 GN=BMAL1 PE=2 SV=1
A0MLS5	Basic helix-loop-helix ARNT-like protein 1 OS=Equus caballus OX=9796 GN=BMAL1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00989	PAS	PAS fold	Domain	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014	Domain	PAS domain	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050933	Family	Circadian Clock Transcription Factors	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013767	Domain	PAS fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751	Cellular Component	aryl hydrocarbon receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02296	ARNTL, BMAL1, CYC; aryl hydrocarbon receptor nuclear translocator-like protein 1	-	Transcription factors	ko03000	deepkoala