Gene detail

Detailed information of ENSAPQP00000002087.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3983204.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KJ34	HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 PE=2 SV=1
O60381	HMG box-containing protein 1 OS=Homo sapiens OX=9606 GN=HBP1 PE=1 SV=2
Q5R7I3	HMG box-containing protein 1 OS=Pongo abelii OX=9601 GN=HBP1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR039655 all species →	Family	HMG box-containing protein 1	Interproscan
IPR036096 all species →	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499 all species →	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000002087.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.