Gene detail

Detailed information of ENSAPQP00000002288.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3993232.1, DDB1- and CUL4-associated factor 1 isoform X1, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000002650

ATGGCTGCATTGGACACGATCACTGATATTTCGGCATTATTGGATAGATGGAAGGAAGCAGAAAGACTGCATCAGAATCCTGTGGAAATATTAGAAAGGATTGCGGATGTTGTTGAAACAGaatatgaattatttttaaagtCTGATCCTGATCCTTTTGATGACAGACATCCAGCCCGTAGTGATCCCAGTGGCACTTACGCTCATGTCTTAAAGAGTTTCAGTAAATGTGGAAACCTGGTTGATGTCCTACTAAACTCATATCTTATGGCAACACGCTTGGATTTCaatttgtgttgtgttgcaaGTCGACTGCTGTTTGATATCATGTGCTGTCTTGAAATGGAGCAGATTTATCAAGAAACTGAGGGTTTACTGCCACGACTGTATGACTGGGCTGAAAATGGGGAAGAACCCTTACGATCTTATTCATTAGgtttgATTGGCATCGCAATGGGAATGCAAGACTTCACTGCGTCACACAGAGAAAATAATTCTCATTTGGTCCCAATTATCATCAACCGCCTAAAATCTTTGAGGGATCTGAGAGACCTCAGTCAAGCAGCAGTTAGAGAATTTCCCAAACCAAAGGTGACAACCAGAAGCAAAAATAATGGAAAATCAAATGGTGgcaataaaaacaagaaagaaaGCAATTTAGAAAGTTCAACATCTTTGCCTGAGACATCAAATAAAGCAAGTCAAAGTGCTTCCAGAAAGGATTCAAAGAAAGTGCGACAGTGTTTGAGACCATCTTCATTCAAACTGAATCCATTAACACTCAGTGGACAGATCAGACTAATGTTAAGATATCTTACACCGCTTGGAGAGTATCAAGAGTTTCTACAAGTAGCTTTTGAACTGGAAGTTCGAAGTATGGTGATGCATTTCATTAATGTCAAACATATTGGTGAAGATGGTGTCATATTCCAAGCTCTACAGTATTTGACATCTTTAATGTGCCATAAGAAATTTGCAGAAGAGTTTGTCAGTCATGGGGGAATCGAGAGGCTTCTTCAAATACCAAAGCCATCAACGTCTGCTACAGCTGTTTCCTGTTGTTTTTATTACTTGGCGTATGTCGAAGATGCTGTGGAGATGaTTTGTCTTCTTCCTCAGCCAGTGTTAACAGAAGTGGTAAAATATGTTTTGTGGCTGCTAGAATGCTCGCATAACTCTGGAAGATGCTATGCAACAATCTTCTTCTCCATTACGTTTTCATTCCGTGCAATATTAAGTTTGTTTGATGCAAACGATGGCCTGAGAAAGTTGATTAACATGCTGAGCACGCTGGAGATCTTAACAGAGTCAACTGAAGTGTTGAGTGAAGACTATCTTTTTGACTGTCGTCAAACAGTGAAACATACTTGTATGGCCCTGAGGCGATACTTTGATGCACAGATTGCCTTAAATGCTGAAATCCTAAGACGATCTCTAGTCAGGTCCAGAGGTGGAGACCCACCCCCTCCAACAGCACCATACAAGGTAAACTTGAGAAGTAGGGCAGTGACAAGGAATTTGCAAGGATTTTCATTGTTGATTCAAATTGTGTGTCTGTCAGCAGAGTGGACTAGTTATACAGCCAGAAACGATGTGTCGAGACTTGCTTGGGAAACTTTAGCCGTTTTAACTGTTTGTGTGGAATCCCAACTGGATTTGGTAGAACCGGTTACTCTGCCTACTGGAGTCACTGAAATTGGTATCAGAGTGTTATTGCGAGCTGCAGAGGGTGAGATGGCGTCTGATGGTGAAACTCGGAAAGCTGCTCTCCAAGTTTTATGCAACTGTCTTTGCTTCCCTAGACAAAAGACATGCAGTAACTCTTCAATTGCCTCTAAAGCATCAAAATTAGGAAAACGCTATTACTCACGAAATGCTGATAATATTCAGCAAAGAATATGGAACTGTGTTCGAGCTAATAATGGCATCAGAGTTCTTCTTTCATTACTTCTTGTTAAGACACCAATGTCTTGCGCTGATTCCATCCGAGCTCTTGCTTGTCGTGCTCTCTGTGGTCTGGCACGTAGTGATGAAATGCGACAAATTATGAGTAAACTACCAATGGTACATGGCGGTCAGCTGCAACtgttGATGGCAGAGCCAATCCTGGAGGACAACGCGAGCGAACATCAGACGTTTTGTAAATACGTCTCGGAATTGTTGGAAAGGGTTCTTGGAAAAACCATTCATACGACGTCATGTTTAACATTGTCCAAAATCACTAAAGCTGATGTGGTGGCTCAGACAAAAATTACATACGCGCGTGAAGAACTGCTTCAACTGGTTCATGATCATTTGGAAGATTCAGGCTTGCATCAGACCGCAAATTCCTTGGCAAAAGAGGCCAATCTGTTTGTGAACAAAACGACAAAACCATCCTCTTCCGCACTTCCTCCACTTCAGAAAAAGgTTCGCTTCAGTGTTTCCCGTCCTAGTCTTTTGGATAATCCATCTACCACTCCAGTTGGTTCTCCAGGAAGCTCAATCGTCCATCGCTTTAGTAGCCCAAATCCCGGAACACCTCTTGTTAAAcACAATTTGCCATCACTTGCTAAACGTCCCAACAGCTGTCCATCGCCTTCGCCACCAACAATGGACTCCATAGTTACGCAGTTTCTCAGAAATCAACATGCAAAATGCAGCCACCCAGTGTCAGTCTGTCCTCCGTTTTCACTGCTTGAACCACATCGTTGTCCAGAACCGAAGAAACGTGGTCATGCTTCAGTAAATATAGCATCCAGGCTAGCTGCTCATCAGGTTTGTATCGaagtttgtattagagagaaaaaaacatcATCACAGTATATGTTGTGTTTAAGGTTTCGTTTTCTTCGTGTTCTGCGCGTACTGGACGAAGTGAGTTACTACACATGTGCTTCGTTCGTGCCAAATTCACAAAAAATCTTCATTGGAACTCAAGCTGGAGAAATGCATGTTTTTGACAGCAATACAGCCGAGCGGTTAAAAACGCATAACTGTCATCGCTCTCTCGTTTCATCTACTATCCCATCAAACgatGGTAAATTATTACTGACATCATCACCATTTGAGACACCGCAGTCTGCATTGTGGTCGATTGGAGAGGAAACGTTAGATAAGAGGTTGACATTTTCTGCGGCTCTTCACGTGAGGTTCAGCAATCAAGCTTTGACTAGAGTCATTGGGACACGAGGATCTTCTGCTGATATTTACGATCTGGCAACTGGACAAAAGATTACAACACTGTGCGACACTAAGAACAGCAACAACTACCTGAGGAATATCGCCACCTTTAACCTCACAGATGAACTTGTTTTGAACGACGGTTTATTATGGGATGTTAGAGGGAGCAAAATGATCCATAAATTTGATAAGTTTAATAACTACGTAAGTGGAGTATTTCATCCGTCAGATTTGGAGATCATTATCAACTCAGAAATTTGGGATCTTCGCTCTTTTCATCTTCTTGACACGTGTCCTTCGTTGGATCAATGTCGCATAACGTTTAACAACAGAGGAGATGTCATATTCGGAGTAAGACACGCGATACCAACGGAAGGAAGGGGGCAGTTTGAATCTTCATTCAAGACAATTGACGCCACAAACTTCCAACAAATTgCTACATATGATGTTAAGAGATCGATTTATAGCTTGGCGATTGATGATAAGGACACAACTATAGCTGTGGTGGAGGTAAGTGTTAGGGAGAAACTTCATATTCAGATGTTATCGTACAATTTTCTCCAGTATTGa

Transcript

ENSAPQT00000002650

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4B6	DDB1- and CUL4-associated factor 1 OS=Homo sapiens OX=9606 GN=DCAF1 PE=1 SV=3
Q80TR8	DDB1- and CUL4-associated factor 1 OS=Mus musculus OX=10090 GN=Dcaf1 PE=1 SV=4
Q9W2F2	Protein mahjong OS=Drosophila melanogaster OX=7227 GN=mahj PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001376 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08513 all species →	LisH	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR033270 all species →	Family	VPRBP/DCAF1 family	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13129 all species →	VPRBP PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000002288.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.