Gene detail

Detailed information of ENSAPQP00000002303.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028407951.1, DDB1- and CUL4-associated factor 1-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000002673

ATGGGAATGCAAGACTTCACTGCGTCACACAGAGAAAATAATTCTCATTTGGTCCCAATTATCATCAACCGCCTAAAATCTTTGAGGGATCTGAGAGACCTCAGTCAAGCAGCAGTTAGAGAATTTCCCAAACCAAAGGTGACAACCAGAAGCAAAAATAATGGAAAATCAAATGGTGgcaataaaaacaagaaagaaaGCAATTTAGAAAGTTCAACATCTTTGCCTGAGACATCAAATAAAGCAAGTCAAAGTGCTTCCAGAAAGGATTCAAAGAAAGTGCGACAGTGTTTGAGACCATCTTCATTCAAACTGAATCCATTAACACTCAGTGGACAGATCAGACTAATGTTAAGATATCTTACACCGCTTGGAGAGTATCAAGAGTTTCTACAAGTAGCTTTTGAACTGGAAGTTCGAAGTATGGTGATGCATTTCATTAATGTCAAACATATTGGTGAAGATGGTGTCATATTCCAAGCTCTACAGTATTTGACATCTTTAATGTGCCATAAGAAATTTGCAGAAGAGTTTGTCAGTCATGGGGGAATCGAGAGGCTTCTTCAAATACCAAAGCCATCAACGTCTGCTACAGCTGTTTCCTGTTGTTTTTATTACTTGGCGTATGTCGAAGATGCTGTGGAGATGaTTTGTCTTCTTCCTCAGCCAGTGTTAACAGAAGTGGTAAAATATGTTTTGTGGCTGCTAGAATGCTCGCATAACTCTGGAAGATGCTATGCAACAATCTTCTTCTCCATTACGTTTTCATTCCGTGCAATATTAAGTTTGTTTGATGCAAACGATGGCCTGAGAAAGTTGATTAACATGCTGAGCACGCTGGAGATCTTAACAGAGTCAACTGAAGTGTTGAGTGAAGACTATCTTTTTGACTGTCGTCAAACAGTGAAACATACTTGTATGGCCCTGAGGCGATACTTTGATGCACAGATTGCCTTAAATGCTGAAATCCTAAGACGATCTCTAGTCAGGTCCAGAGGTGGAGACCCACCCCCTCCAACAGCACCATACAAGTCGATGGTAATGACTCAAGCGAGTGTattggaaaatattgaacTGCTTctggaaaattcacatgtgatcACGAGATGGCCTTCAATTGAGATGATGAGGAATTTGCAAGGATTTTCATTGTTGATTCAAATTGTGTGTCTGTCAGCAGAGTGGACTAGTTATACAGCCAGAAACGATGTGTCGAGACTTGCTTGGGAAACTTTAGCCGTTTTAACTGTTTGTGTGGAATCCCAACTGGATTTGGTAGAACCGGTTACTCTGCCTACTGGAGTCACTGAAATTGGTATCAGAGTGTTATTGCGAGCTGCAGAGGGTGAGATGGCGTCTGATGGTGAAACTCGGAAAGCTGCTCTCCAAGTTTTATGCAACTGTCTTTGCTTCCCTAGACAAAAGACATGCAGTAACTCTTCAATTGCCTCTAAAGCATCAAAATTAGGAAAACGCTATTACTCACGAAATGCTGATAATATTCAGCAAAGAATATGGAACTGTGTTCGAGCTAATAATGGCATCAGAGTTCTTCTTTCATTACTTCTTGTTAAGACACCAATGTCTTGCGCTGATTCCATCCGAGCTCTTGCTTGTCGTGCTCTCTGTGGTCTGGCACGTAGTGATGAAATGCGACAAATTATGAGTAAACTACCAATGGTACATGGCGGTCAGCTGCAACtgttGATGGCAGAGCCAATCCTGGAGGACAACGCGAGCGAACATCAGACGTTTTGTAAATACGTCTCGGAATTGTTGGAAAGGGTTCTTGGAAAAACCATTCATACGACGTCATGTTTAACATTGTCCAAAATCACTAAAGCTGATGTGGTGGCTCAGACAAAAATTACATACGCGCGTGAAGAACTGCTTCAACTGGTTCATGATCATTTGGAAGATTCAGGCTTGCATCAGACCGCAAATTCCTTGGCAAAAGAGGCCAATCTGTTTGTGAACAAAACGACAAAACCATCCTCTTCCGCACTTCCTCCACTTCAGAAAAAGgTTCGCTTCAGTGTTTCCCGTCCTAGTCTTTTGGATAATCCATCTACCACTCCAGTTGGTTCTCCAGGAAGCTCAATCGTCCATCGCTTTAGTAGCCCAAATCCCGGAACACCTCTTGTTAAAcACAATTTGCCATCACTTGCTAAACGTCCCAACAGCTGTCCATCGCCTTCGCCACCAACAATGGACTCCATAGTTACGCAGTTTCTCAGAAATCAACATGCAAAATGCAGCCACCCAGTGTCAGTCTGTCCTCCGTTTTCACTGCTTGAACCACATCGTTGTCCAGAACCGAAGAAACGTGGTCATGCTTCAGTAAATATAGCATCCAGGCTAGCTGCTCATCAGGTACATTTAAACTATGGTGGTCCTGAAGGAAACAGATTAAACCGAAGATATCTGTACAGCAGGTTTCGTTTTCTTCGTGTTCTGCGCGTACTGGACGAAGTGAGTTACTACACATGTGCTTCGTTCGTGCCAAATTCACAAAAAATCTTCATTGGAACTCAAGCTGGAGAAATGCATGTTTTTGACAGCAATACAGCCGAGCGGTTAAAAACGCATAACTGTCATCGCTCTCTCGTTTCATCTACTATCCCATCAAACgatGGTAAATTATTACTGACATCATCACCATTTGAGACACCGCAGTCTGCATTGTGGTCGATTGGAGAGGAAACGTTAGATAAGAGGTTGACATTTTCTGCGGCTCTTCACGTGAGGTTCAGCAATCAAGCTTTGACTAGAGTCATTGGGACACGAGGATCTTCTGCTGATATTTACGATCTGGCAACTGGACAAAAGATTACAACACTGTGCGACACTAAGAACAGCAACAACTACCTGAGGAATATCGCCACCTTTAACCTCACAGATGAACTTGTTTTGAACGACGGTTTATTATGGGATGTTAGAGGGAGCAAAATGATCCATAAATTTGATAAGTTTAATAACTACGTAAGTGGAGTATTTCATCCGTCAGATTTGGAGATCATTATCAACTCAGAAATTTGGGATCTTCGCTCTTTTCATCTTCTTGACACGTGTCCTTCGTTGGATCAATGTCGCATAACGTTTAACAACAGAGGAGATGTCATATTCGGAGTAAGACACGCGATACCAACGGAAGGAAGGGGGCAGTTTGAATCTTCATTCAAGACAATTGACGCCACAAACTTCCAACAAATTgCTACATATGATGTTAAGAGATCGATTTATAGCTTGGCGATTGATGATAAGGACACAACTATAGCTGTGGTGGAGAATCAAGGGAGTGAAGATTCGAACGTGGAGAGTGTTTGTAGACTTTATGAAATTGGGAGAACAAAACGAGAAGGCgaagaagatgatgaagaagaggGCGATGAAGATGAAGAAATGGAGAGCGGTGATGATGAAGACGATGACTTGGCTGACTTTATTGTTGAAGATGACGAGAATGAAGACTTTGAGTTTCATGATCCCCTTGAAGAAATGTTTCGACGAGATTTTGACGAACATTTTAACAACAATGGAGCCGCTATGGATGATGCAATCTTCGATAATGATGACAGTGACAGTGACAGTgattttgatgatgatgatgatgatgatgatgatgatgatagtgaCAGTGATTTTGACGATAATGTACGTTTCTTTTTGGCAACTACTAGTGAATCATCAGACTAA

Transcript

ENSAPQT00000002673

CCCGTAGTGATCCCAGTGGCACTTACGCTCATGTCTTAAAGAGTTTCAGTAAATGTGGAAACCTGGTTGATGTCCTACTAAACTCATATCTTATGGCAACACGCTTGGATTTCaatttgtgttgtgttgcaaGTCGACTGCTGTTTGATATCATGTGCTGTCTTGAAATGGAGCAGATTTATCAAGAAACTgtttgATTGGCATCGCAATGGGAATGCAAGACTTCACTGCGTCACACAGAGAAAATAATTCTCATTTGGTCCCAATTATCATCAACCGCCTAAAATCTTTGAGGGATCTGAGAGACCTCAGTCAAGCAGCAGTTAGAGAATTTCCCAAACCAAAGGTGACAACCAGAAGCAAAAATAATGGAAAATCAAATGGTGgcaataaaaacaagaaagaaaGCAATTTAGAAAGTTCAACATCTTTGCCTGAGACATCAAATAAAGCAAGTCAAAGTGCTTCCAGAAAGGATTCAAAGAAAGTGCGACAGTGTTTGAGACCATCTTCATTCAAACTGAATCCATTAACACTCAGTGGACAGATCAGACTAATGTTAAGATATCTTACACCGCTTGGAGAGTATCAAGAGTTTCTACAAGTAGCTTTTGAACTGGAAGTTCGAAGTATGGTGATGCATTTCATTAATGTCAAACATATTGGTGAAGATGGTGTCATATTCCAAGCTCTACAGTATTTGACATCTTTAATGTGCCATAAGAAATTTGCAGAAGAGTTTGTCAGTCATGGGGGAATCGAGAGGCTTCTTCAAATACCAAAGCCATCAACGTCTGCTACAGCTGTTTCCTGTTGTTTTTATTACTTGGCGTATGTCGAAGATGCTGTGGAGATGaTTTGTCTTCTTCCTCAGCCAGTGTTAACAGAAGTGGTAAAATATGTTTTGTGGCTGCTAGAATGCTCGCATAACTCTGGAAGATGCTATGCAACAATCTTCTTCTCCATTACGTTTTCATTCCGTGCAATATTAAGTTTGTTTGATGCAAACGATGGCCTGAGAAAGTTGATTAACATGCTGAGCACGCTGGAGATCTTAACAGAGTCAACTGAAGTGTTGAGTGAAGACTATCTTTTTGACTGTCGTCAAACAGTGAAACATACTTGTATGGCCCTGAGGCGATACTTTGATGCACAGATTGCCTTAAATGCTGAAATCCTAAGACGATCTCTAGTCAGGTCCAGAGGTGGAGACCCACCCCCTCCAACAGCACCATACAAGTCGATGGTAATGACTCAAGCGAGTGTattggaaaatattgaacTGCTTctggaaaattcacatgtgatcACGAGATGGCCTTCAATTGAGATGATGAGGAATTTGCAAGGATTTTCATTGTTGATTCAAATTGTGTGTCTGTCAGCAGAGTGGACTAGTTATACAGCCAGAAACGATGTGTCGAGACTTGCTTGGGAAACTTTAGCCGTTTTAACTGTTTGTGTGGAATCCCAACTGGATTTGGTAGAACCGGTTACTCTGCCTACTGGAGTCACTGAAATTGGTATCAGAGTGTTATTGCGAGCTGCAGAGGGTGAGATGGCGTCTGATGGTGAAACTCGGAAAGCTGCTCTCCAAGTTTTATGCAACTGTCTTTGCTTCCCTAGACAAAAGACATGCAGTAACTCTTCAATTGCCTCTAAAGCATCAAAATTAGGAAAACGCTATTACTCACGAAATGCTGATAATATTCAGCAAAGAATATGGAACTGTGTTCGAGCTAATAATGGCATCAGAGTTCTTCTTTCATTACTTCTTGTTAAGACACCAATGTCTTGCGCTGATTCCATCCGAGCTCTTGCTTGTCGTGCTCTCTGTGGTCTGGCACGTAGTGATGAAATGCGACAAATTATGAGTAAACTACCAATGGTACATGGCGGTCAGCTGCAACtgttGATGGCAGAGCCAATCCTGGAGGACAACGCGAGCGAACATCAGACGTTTTGTAAATACGTCTCGGAATTGTTGGAAAGGGTTCTTGGAAAAACCATTCATACGACGTCATGTTTAACATTGTCCAAAATCACTAAAGCTGATGTGGTGGCTCAGACAAAAATTACATACGCGCGTGAAGAACTGCTTCAACTGGTTCATGATCATTTGGAAGATTCAGGCTTGCATCAGACCGCAAATTCCTTGGCAAAAGAGGCCAATCTGTTTGTGAACAAAACGACAAAACCATCCTCTTCCGCACTTCCTCCACTTCAGAAAAAGgTTCGCTTCAGTGTTTCCCGTCCTAGTCTTTTGGATAATCCATCTACCACTCCAGTTGGTTCTCCAGGAAGCTCAATCGTCCATCGCTTTAGTAGCCCAAATCCCGGAACACCTCTTGTTAAAcACAATTTGCCATCACTTGCTAAACGTCCCAACAGCTGTCCATCGCCTTCGCCACCAACAATGGACTCCATAGTTACGCAGTTTCTCAGAAATCAACATGCAAAATGCAGCCACCCAGTGTCAGTCTGTCCTCCGTTTTCACTGCTTGAACCACATCGTTGTCCAGAACCGAAGAAACGTGGTCATGCTTCAGTAAATATAGCATCCAGGCTAGCTGCTCATCAGGTACATTTAAACTATGGTGGTCCTGAAGGAAACAGATTAAACCGAAGATATCTGTACAGCAGGTTTCGTTTTCTTCGTGTTCTGCGCGTACTGGACGAAGTGAGTTACTACACATGTGCTTCGTTCGTGCCAAATTCACAAAAAATCTTCATTGGAACTCAAGCTGGAGAAATGCATGTTTTTGACAGCAATACAGCCGAGCGGTTAAAAACGCATAACTGTCATCGCTCTCTCGTTTCATCTACTATCCCATCAAACgatGGTAAATTATTACTGACATCATCACCATTTGAGACACCGCAGTCTGCATTGTGGTCGATTGGAGAGGAAACGTTAGATAAGAGGTTGACATTTTCTGCGGCTCTTCACGTGAGGTTCAGCAATCAAGCTTTGACTAGAGTCATTGGGACACGAGGATCTTCTGCTGATATTTACGATCTGGCAACTGGACAAAAGATTACAACACTGTGCGACACTAAGAACAGCAACAACTACCTGAGGAATATCGCCACCTTTAACCTCACAGATGAACTTGTTTTGAACGACGGTTTATTATGGGATGTTAGAGGGAGCAAAATGATCCATAAATTTGATAAGTTTAATAACTACGTAAGTGGAGTATTTCATCCGTCAGATTTGGAGATCATTATCAACTCAGAAATTTGGGATCTTCGCTCTTTTCATCTTCTTGACACGTGTCCTTCGTTGGATCAATGTCGCATAACGTTTAACAACAGAGGAGATGTCATATTCGGAGTAAGACACGCGATACCAACGGAAGGAAGGGGGCAGTTTGAATCTTCATTCAAGACAATTGACGCCACAAACTTCCAACAAATTgCTACATATGATGTTAAGAGATCGATTTATAGCTTGGCGATTGATGATAAGGACACAACTATAGCTGTGGTGGAGAATCAAGGGAGTGAAGATTCGAACGTGGAGAGTGTTTGTAGACTTTATGAAATTGGGAGAACAAAACGAGAAGGCgaagaagatgatgaagaagaggGCGATGAAGATGAAGAAATGGAGAGCGGTGATGATGAAGACGATGACTTGGCTGACTTTATTGTTGAAGATGACGAGAATGAAGACTTTGAGTTTCATGATCCCCTTGAAGAAATGTTTCGACGAGATTTTGACGAACATTTTAACAACAATGGAGCCGCTATGGATGATGCAATCTTCGATAATGATGACAGTGACAGTGACAGTgattttgatgatgatgatgatgatgatgatgatgatgatagtgaCAGTGATTTTGACGATAATGTACGTTTCTTTTTGGCAACTACTAGTGAATCATCAGACTAAATCAGTTTTTTGTGTGTAAAAATAATGTACGTTGagttaaatattgaaattataaAAGACGTGAGATTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4B6	DDB1- and CUL4-associated factor 1 OS=Homo sapiens OX=9606 GN=DCAF1 PE=1 SV=3
Q80TR8	DDB1- and CUL4-associated factor 1 OS=Mus musculus OX=10090 GN=Dcaf1 PE=1 SV=4
Q9W2F2	Protein mahjong OS=Drosophila melanogaster OX=7227 GN=mahj PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001376 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08513 all species →	LisH	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR033270 all species →	Family	VPRBP/DCAF1 family	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13129 all species →	VPRBP PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11789	DCAF1, VPRBP; DDB1- and CUL4-associated factor 1	EC:2.7.11.1	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.