Gene detail

Detailed information of ENSAPQP00000003890.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028399850.1, U1 small nuclear ribonucleoprotein C-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RLC9	U1 small nuclear ribonucleoprotein C OS=Ciona intestinalis OX=7719 PE=2 SV=1
E1C6F0	U1 small nuclear ribonucleoprotein C OS=Gallus gallus OX=9031 GN=SNRPC PE=3 SV=1
Q8JGS0	U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 GN=snrpc PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06220 all species →	zf-U1	U1 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017340 all species →	Family	U1 small nuclear ribonucleoprotein C	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR000690 all species →	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013085 all species →	Domain	U1-C, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31148 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000395 all species →	Biological Process	mRNA 5'-splice site recognition	Interproscan
GO:0030627 all species →	Molecular Function	pre-mRNA 5'-splice site binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11095	SNRPC; U1 small nuclear ribonucleoprotein C	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.