Gene detail

Detailed information of ENSAPQP00000006141.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028392224.1, uncharacterized protein LOC114516838 isoform X1 [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000006874

GCATTGCGCAATAAAAATTCATCATAACAAATGGCTGGAAAAACAGCTTCGCTCGCAGTTGAAAGTGCGATCGGCGAGGGACTTCTTGGTCCGTCCAACTCTATAGAACTACAGTCAGGACAGCCACAACCGTTGGGACTGTTTTACGATTTGGACGTGTTTGAAAGAGGTTTACAAGATGTGCAGAATGCATTTGGAGCAGGTTTCTTTCATGCCATGGCAGTAAAGGCCAACGCTGTGAGCTCAATTCTCAAGATTGTTTGTGATAAGGGTCTTGGTGCAGAATGTGCGTCGAttggtgaaattttcaattgccTTCATGCTGGCtttacctgtgataaaattgtGTACGATTCTCCAGTGAAAACGGCTGCCGAAATAAGATTTGCTTTGGAAAAGGGTATTCATATTAATGCAGATAATTTTCAAGAGATTGATGTTATTGCCGAAGAATTGAAATCCATGAATGGTGAGTGTAGATCAACAATTGGTCTCCGTGTGAATCCGGTCATCGGTGATGGTGATATAAAGGAACTAAGCTGTTCATCGGAAACCACGAAATTTGGCGTTCCGATGACGGAGGAtggaaagaagaaaatcgcggaatatttcattcaatatCCATGGCTGACTACCGTGCATGCGCACATCGGATCTCAGTCATTTAATCCGGAACAATTATCTCACGGGTTAAGAAAAGTTGTTAAGTTAGCTTTGGAAATCAATGAAAAAGTTGGTCGCAATCAAGTGTGTGTGTTGGATATTGGCGGAGGACTTCCGGTAAATAGAGAGGATGATACGGTAGCACCGACCTACTACGAGTATGCTAACACTTTAAGAAAAGTTATACCTGAACTGTTCCCTGAGTATGGCGTGTTTAGGAAAGTGATAACAGAATTTGGTCAGTCTTTGAATGCTAAGACAGGTTGGTTGGCTAGCAGAGTGGAATATGTAAAACCATCCGCAAATGAAGAACTCGGCATTATCCTCACCTCCATTGGAGCGGATCTTTGCATGCGAACTTGCTACCGTCCTGAGCAGAAAAAGTACCAGCGGAGAGTACGTGTTTTCGACAAAAATGGCCGTTTGAAGACAGGCAGGGAAAAACGGTACAACATTGCTGGCCCTTTGTGTTTTTCGGGCGACGTGCTGAAATATGATGTCCTTTTACCAGAGGTCGAAAGAGGAGATTACATTGTTTTACTTGATTGTGGTGCAAATTCTTTATCGGTTCTTAACAGACATTGCAGTCGATTTGCTCCGTCTGTTTTCGGCTATCGTACAACGAAAACTGGTGAAGTGAAGTTTGTTACGCTAAAGGAGGCGGAAACAAAAGATGAATTGCTGACATTTTTGGGAGcCGGGAAGAAGGAagacaaacaaaacaacacataACATGGactgtacaaatattatcagTTAGTATATTCCAGGATTTGTGAGGTTTGTGCACACACTTATGATTTACTGTGATTACAGGGTGCGATAATTCGCGTATTAACATAGCTACGCCAAATTTATTGTCTGGTGCTTCTTTATTTTCAAGCAAGTAGTACCACTTTGGTACTCGGCTATTCGCGTACTTACGTTTTCCTTTCCAAAAATCATATCgttaaaaaaatcatgttgTGTGACTTGGGCTTAAAACGCTTTGAAAACTGTTATATTTGGTTGTGCAAATGGGATAATTAAAGATtcgtttatatataaaattgccCATATATTTTTTCCCTATATAACCAAGGTAAACTGTACTTAGGTATAAAAACGCATCACTCCGAAGTTAAGTCTTAGGTGCGCATCGATCCTTAAATTGGTACCAGATGAAGTACGCggcaaaaaatattgaattatcgCACCCTTTGTGTGGTGTTGATAGACAAACAAACATCTCTTTATATCAAGTTGGTTATATCATCAACACAAAATTTTATTATAGTTTATTTGTCTAtaattttgttcaatgaaGTTCTTCGCCAAACACGAAAGGTATTAGCCAAACctattttaaattaaacttgTAGCACCAAATTAGTAATTCTAGAcgaatgtaattataatagtcagtttattttttttataaattattgtttttaatccTGAACTTGAGCTGAAGCGTTATCAACAACTTTGTTAATTTCGGGATTTAACCAGTCCAGGCTAAGATCGTCTAGGTGATTATCAAAATCCACCAAGCTGGGATAAGCTTTGCCAATCATCAATTGAGACACAATATTCAGGGTATCATCGTCAGCTAGGGAACTAGATGTTgggtgaaaatttttttcggtTTAATAATGCAGGTATGCGCAAATTCACAAACACCTTTTCAAATCCATAATAATAAGCATATTGATCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23630	Diaminopimelate decarboxylase OS=Bacillus subtilis (strain 168) OX=224308 GN=lysA PE=3 SV=5
Q9KCM5	Diaminopimelate decarboxylase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=lysA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008078 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR002433 all species →	Family	Ornithine decarboxylase	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR022657 all species →	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43727 all species →	DIAMINOPIMELATE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006596 all species →	Biological Process	polyamine biosynthetic process	Interproscan
GO:0008836 all species →	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01586	lysA; diaminopimelate decarboxylase	EC:4.1.1.20	D-Amino acid metabolism	ko00470	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.