Gene detail

Detailed information of ENSAPQP00000007162.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028393317.1, apoptotic protease-activating factor 1-like isoform X2 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000007989

ATGGAGAAACTCGATAACATACAATCCACACTGCTTCGCAAAATTAAAGAGGTTGAAAGGTCTGCAGCTGAAAAACTTGAACATCATTCAATGGAGCTTAAACGTCTGGCGGAGAAAACAGATGAAATCGAATGTCGTCAGAAAAAGCCGAGGACGGAGCATTCAGATTTTGCAGAGAAAAAAGtTGCGTATGGATTACGGAATCTACCTCGTGACATGGTGGAAAGACCATCAGAAGTGAACGACATATTGAAACTACTTACAGAAGGAAATAATCGAGTTGGTGTGGTCGGGAATCGTAGCGGCGACGTCGTTGGTATCCGTGGTATGGGGGGTCTGGGTAAGACCATCTTAGCTCTGGCTGTCGCTTGGGCTGCCAAAGAATCTCGTCAAGTAATATGGCTTGATGTTGGAGAAACTCCTGACTGCTTATCACTCATTAACCTGCTCATAAAAGTTCTTGGTGGCGAAGCATCGTTCACTGATATCCGGGCAGCGCAATCCTGGGTCATAGCAAACACGAGTGACAAAGATTGCTTGGTGATtcttgatgatgtttggaGTGTAAACCACGCTTCTGTATTTGATCATCTCTCTGgaaaatgccaattattaataactacAAGGAATTCTGAAGTTGTCCGCGGTTTACAAGGTTCTACTTTGTATACACTGAAATTTTTAGAACGGACTGGATCTTACAAGCTCTTGTATCAAAGCGCCCAAGTCACCGAGGACGAGCAGTCTGAGTTTAGCTCAAACATGCGGCGAATTATAGAGGAATTGTTAAACCACTGCGGCGATCTACCGCTAGCTCTGTCCCTAGTGGGTTCAAGTTTAGCCGACACTCGCGACGAACAAGACTGGGAAGACGTTTTAAATGACCTCAAAAAAGCAGACTTGCTAAAATTACGTTCAATATATCCCGCCGAAGCTTATCCTTACGATAACGTCTTAACAGCCATTAACGCCAGCTTTCAAAATTTGGACGAAGAAATACGAGAAAAGTTTCTAGATTTCGCTTTATTTCCAGAAGATACGGATGTACCATCAGATATTCTTGAACTGTTTTGGTCTTTCAAAGGAGCCGGAAGAACTTCGTGCAGCCGTCGTGAAGCAAGACGTATACTTGATGAGCTCGAAAAGAAGTCGATGattcaaaaagGATCTGGTATCAATGGGAAGAAGAGCTATCGGCTCCACGATCTCCTTTTGGGTTTTGCACGTGCAAAACTTGGAGCTAAACTAGGTTCTGTTCAATGCTTGTTCGTGGAGGCACTTCGTGGTCACTGCGAGAACGGTGATTGGGGGAAATTTGAAGGCAACAAAgattattatttcaagtacctGACCTATCACCTCCACTCCTCCGAACAATTTGATGAACTacataaactgttcttcaattttaactgGCTTTATGAAAAGGTGAATCGATTCGATCTCCCCGCCttaatatcagattttcgttttctggACCCTCCCTCGAAAGAAATCGAACTGCTCAAGTCGTCGTTGATGCTGTCCTCGACGGTTATCGAGAAGAATTTGCATTCTATTGGTCCTCAGCTGTTAGgCAGACTGCTATCTTATGAAGAGTTTCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGCCGTCTTATACCGGAATTCTCATGTTTAGATCTTGGAGGCCCAGAgatctttcgaaaaacgtttgattTAGAAGTATGGTCATTAGCAACGTCCAATACTACATGCGCTACTCTTGTCATTTGTGGTTTATTCGATGGCtcaatcacaatctttgatCTTGACACAGGTAGaGAAGTTCAACAACTACTGGGACATTCTGACGTCGTTAACTGTTTGgctgtgtcacaaagtggaacaatACTAGCGTCAGGATCGCCGGACGGAAGTACAATACTTTGGAGAATGGAAAGttatgaacagctttttgtgttccaaGGGAAGAGTTACGTTAATGCCCtggatttcagtgcagatgatcagcgagtgtttattGGAACAAAAGACgggctgaaagtgtattgtgtttctaccggagaaaacctctcaacaagtattcctgagGGAGTCATGtcgctgtgtacgaccaaagatggacagttcattgctactgttggatATCATGACAACactatcaagttgtggaaagccgatacactaaattttgaggccAGTTTGGTTGCCCATACACATTGGGTGAGATgtgttgtcgcaacagattcagggaaaaacaatccaatgctTGTGTCTGCCTCAGGCGAtgggacaataaaaatttgggatttaaaaatatatcaagAAATTCGTACTCTTAAGGGTCATGAATACGATGTTACCAGTGTCGCTGTGAGCGATGATAAAAAGAATATTATCTCCGGAGACGATGAAGGAAGTGTGAGGTTGTGGTGTTTCCACACTGGAAAATGCCTTTCCTGTTATGAAGGTCATACCGATCGCATCAGcgGTGTCGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCAGAGGATGGAAGTATCAGGGTTTGGAACCTGGGAACTGCTGCGTACATGGAACAATACAGTCTCTCTGATCAttcaaatgacgtcacagacATCACAATCGCTCGTGATGGCCCTATATGCGTTTCCGCTTCAAATGATGgtactttcaaagtttggaatcttCACACACATGCACAGTGCTTTTCTGTCGaaggtgaccttgaatgggcaaaacatgttgcagtctctgctgatgatcgctatgtcgtgtcgctttcaaaggaatataaCTCAACGAAGTCCTCGATAAAGgtgtggaatttgtcTGATGGCAGTGTGACCAATGGAATTGATAGCGATGGCACACCTgagattgttcgctttagttctgatgggttgcatgttataattggatgcaaagataaccatgtgttcatctgggactggcaaaatcctgatgcgtctttgaaagaagtcattttaccCGTATCCTATACAGTGGAAATAGCATGCGATCGCaacatgatttacacatgcagcgctgatatgcatatttgtgaaatcaatctcgacTCTTTGCAAGTATCGACTGTACGTCCGAGGGTTGCACCTGTAATATCACCCGACGGCAAAGATCTTTTGTTTGGCTTGCTTCAGAATAATGTGTTTCTCCACCGGAAACTTTCAACTGCTAGTTGGGTCGACCATGATGCAGGTGGGTAA

Transcript

ENSAPQT00000007989

gtgatttcaaatttgtttcagCCCGTAAATTGAATTTACTAAATCAAATTTATCTATTCAGATAAATCCAGTGATGGAGAAACTCGATAACATACAATCCACACTGCTTCGCAAAATTAAAGAGGTTGAAAGGTCTGCAGCTGAAAAACTTGAACATCATTCAATGGAGCTTAAACGTCTGGCGGAGAAAACAGATGAAATCGAATGTCGTCAGAAAAAGCCGAGGACGGAGCATTCAGATTTTGCAGAGAAAAAAGtTGCGTATGGATTACGGAATCTACCTCGTGACATGGTGGAAAGACCATCAGAAGTGAACGACATATTGAAACTACTTACAGAAGGAAATAATCGAGTTGGTGTGGTCGGGAATCGTAGCGGCGACGTCGTTGGTATCCGTGGTATGGGGGGTCTGGGTAAGACCATCTTAGCTCTGGCTGTCGCTTGGGCTGCCAAAGAATCTCGTCAAGTAATATGGCTTGATGTTGGAGAAACTCCTGACTGCTTATCACTCATTAACCTGCTCATAAAAGTTCTTGGTGGCGAAGCATCGTTCACTGATATCCGGGCAGCGCAATCCTGGGTCATAGCAAACACGAGTGACAAAGATTGCTTGGTGATtcttgatgatgtttggaGTGTAAACCACGCTTCTGTATTTGATCATCTCTCTGgaaaatgccaattattaataactacAAGGAATTCTGAAGTTGTCCGCGGTTTACAAGGTTCTACTTTGTATACACTGAAATTTTTAGAACGGACTGGATCTTACAAGCTCTTGTATCAAAGCGCCCAAGTCACCGAGGACGAGCAGTCTGAGTTTAGCTCAAACATGCGGCGAATTATAGAGGAATTGTTAAACCACTGCGGCGATCTACCGCTAGCTCTGTCCCTAGTGGGTTCAAGTTTAGCCGACACTCGCGACGAACAAGACTGGGAAGACGTTTTAAATGACCTCAAAAAAGCAGACTTGCTAAAATTACGTTCAATATATCCCGCCGAAGCTTATCCTTACGATAACGTCTTAACAGCCATTAACGCCAGCTTTCAAAATTTGGACGAAGAAATACGAGAAAAGTTTCTAGATTTCGCTTTATTTCCAGAAGATACGGATGTACCATCAGATATTCTTGAACTGTTTTGGTCTTTCAAAGGAGCCGGAAGAACTTCGTGCAGCCGTCGTGAAGCAAGACGTATACTTGATGAGCTCGAAAAGAAGTCGATGattcaaaaagGATCTGGTATCAATGGGAAGAAGAGCTATCGGCTCCACGATCTCCTTTTGGGTTTTGCACGTGCAAAACTTGGAGCTAAACTAGGTTCTGTTCAATGCTTGTTCGTGGAGGCACTTCGTGGTCACTGCGAGAACGGTGATTGGGGGAAATTTGAAGGCAACAAAgattattatttcaagtacctGACCTATCACCTCCACTCCTCCGAACAATTTGATGAACTacataaactgttcttcaattttaactgGCTTTATGAAAAGGTGAATCGATTCGATCTCCCCGCCttaatatcagattttcgttttctggACCCTCCCTCGAAAGAAATCGAACTGCTCAAGTCGTCGTTGATGCTGTCCTCGACGGTTATCGAGAAGAATTTGCATTCTATTGGTCCTCAGCTGTTAGgCAGACTGCTATCTTATGAAGAGTTTCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGCCGTCTTATACCGGAATTCTCATGTTTAGATCTTGGAGGCCCAGAgatctttcgaaaaacgtttgattTAGAAGTATGGTCATTAGCAACGTCCAATACTACATGCGCTACTCTTGTCATTTGTGGTTTATTCGATGGCtcaatcacaatctttgatCTTGACACAGGTAGaGAAGTTCAACAACTACTGGGACATTCTGACGTCGTTAACTGTTTGgctgtgtcacaaagtggaacaatACTAGCGTCAGGATCGCCGGACGGAAGTACAATACTTTGGAGAATGGAAAGttatgaacagctttttgtgttccaaGGGAAGAGTTACGTTAATGCCCtggatttcagtgcagatgatcagcgagtgtttattGGAACAAAAGACgggctgaaagtgtattgtgtttctaccggagaaaacctctcaacaagtattcctgagGGAGTCATGtcgctgtgtacgaccaaagatggacagttcattgctactgttggatATCATGACAACactatcaagttgtggaaagccgatacactaaattttgaggccAGTTTGGTTGCCCATACACATTGGGTGAGATgtgttgtcgcaacagattcagggaaaaacaatccaatgctTGTGTCTGCCTCAGGCGAtgggacaataaaaatttgggatttaaaaatatatcaagAAATTCGTACTCTTAAGGGTCATGAATACGATGTTACCAGTGTCGCTGTGAGCGATGATAAAAAGAATATTATCTCCGGAGACGATGAAGGAAGTGTGAGGTTGTGGTGTTTCCACACTGGAAAATGCCTTTCCTGTTATGAAGGTCATACCGATCGCATCAGcgGTGTCGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCAGAGGATGGAAGTATCAGGGTTTGGAACCTGGGAACTGCTGCGTACATGGAACAATACAGTCTCTCTGATCAttcaaatgacgtcacagacATCACAATCGCTCGTGATGGCCCTATATGCGTTTCCGCTTCAAATGATGgtactttcaaagtttggaatcttCACACACATGCACAGTGCTTTTCTGTCGaaggtgaccttgaatgggcaaaacatgttgcagtctctgctgatgatcgctatgtcgtgtcgctttcaaaggaatataaCTCAACGAAGTCCTCGATAAAGgtgtggaatttgtcTGATGGCAGTGTGACCAATGGAATTGATAGCGATGGCACACCTgagattgttcgctttagttctgatgggttgcatgttataattggatgcaaagataaccatgtgttcatctgggactggcaaaatcctgatgcgtctttgaaagaagtcattttaccCGTATCCTATACAGTGGAAATAGCATGCGATCGCaacatgatttacacatgcagcgctgatatgcatatttgtgaaatcaatctcgacTCTTTGCAAGTATCGACTGTACGTCCGAGGGTTGCACCTGTAATATCACCCGACGGCAAAGATCTTTTGTTTGGCTTGCTTCAGAATAATGTGTTTCTCCACCGGAAACTTTCAACTGCTAGTTGGGTCGACCATGATGCAGGTGGGTAAATCaaggaatatttgaaacttcCAAATACTTTTAAGTCTTTGATGCGACTACAGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60838	Disease resistance protein SUMM2 OS=Arabidopsis thaliana OX=3702 GN=SUMM2 PE=1 SV=1
O64790	Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana OX=3702 GN=At1g61300 PE=2 SV=2
Q8RXS5	Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana OX=3702 GN=At5g63020 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010175 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050505 all species →	Family	WD repeat-containing protein WDR55/POC1	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR042197 all species →	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44019 all species →	WD REPEAT-CONTAINING PROTEIN 55	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02084	APAF1; apoptotic protease-activating factor	-	Platinum drug resistance	ko01524	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.