Gene detail

Detailed information of ENSAPQP00000007197.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3999052.1, alanine--tRNA ligase, cytoplasmic [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000008031

atgttacggtgttttgaaaaatgttttgttacatttgttctatttttgttggTTGGCAACTTCATTGCTGGTAATGACACCTCGTCAGATAAAAGTTCTCGCCAACCATCGGGTGGTAATGCACCACACACTAAACTGCCAGTAGATACATATTATTATCCTGGTACCCGCTATTGGTATTACCTCATGGATATTGAAGTGACACGAGTTGGTCATTCTGGTACAATGGGTTATATTACTGGCAGTACACAACAACAAAGTGACATCACAAAGTTTTATGGTGAAATCTACAAACACTATGCTCATGGTTGGATGTTGAACACATTTTATGAAGTTCCTGGTATTGGCAAGATTGGATGGAGTGCATCGTCCTCACCATTCCAATTTGTTTATCTTAAACCAATTGCAAATGCACCAGTTGCCCACACATGGGATCTCAAAATTGGCAAATGTTACATCCACACCCAGTTAGTTACTGGTATTATAGGAAGACAGAACCATAATGTTGCAAATACAACTGGGATTAAACAATTTGCAGCAACTGGCGGGCGTATGATTGGAATTGAGTTCACTGGCGAACGAAAGAAACAGTCTGGAATAGCGGTTGGAAAGAGTGACTtGATGGGTGTTGACTTACTGTTCAATGTTCCAAAGCATCCCAACCCAGTTCTCTACAGTTACCAATGTGTAAATGTGCCAGTGCGTATTATGTACCTTGGAACCGGTAAACTTGTCAAGGTTGAGTGTGAGTGGATGCAACATTTTGCACAACATTTACAACAAGGATGGAAACTCATTGATATTTTCTGGGACCAAAGCAAGAAAAGTCATGGAGGTATGATATGTTATGAGATGGGGAATCGTGGTTGGGAACTTGCTTGTATGTTGGAATCACCTGAAATCATTACTGTGGGTCTGGGAACTATTACATACAAAGtatatttcttctttcaaCGTCCCATAATGCAACCTCCACCAGGGGGCTACCCTCCTCAAGCTTACCCTCAAGCATATCCCCTTGGTCCTCAACCTAACCCTAATGCCCCCCAAGCTTACCCCCCACAACCAGGGTATCCCCAAGCCCCACCACCTTACACACAGGGCCAACCTGGAGGTCATGGGGCCACTGCCTATCCATATCCCCAAGCTAGTGCTCCTCCACCCCCTGGTCCAGCTCGCCCACCTCCCCCTGGTAGTTCTGTCCCCCCTGGTGTAACGTTTCGCAAGAACTGGTGTTTTCTTTGTTCTTTttcgaaagtttttttttctctcgAAACCTTTCACTATCACAAAATGGATAGCAGCTTATCTGGCAAAGACATTCGGCGTCAAttcgttgattttttcgtggAAAAGAAAGCACATACTTTCGTCCATTCATCTTCTGTTATTCCACACGAAGACCCCACGTTGCTGTTTGCAAATGCTGGAATGAATCAGCAAAAAGCAATAGAGTGGGCCATAGAGCTGTTAGTTGATCATTGGAAATTGCCAAAAGAGCGACTGTATGCAACTTATTTTGGTGGGTATAAAGATTTGCCTCCAGACAATGAAGCAAAAGAGTTCTGGCTAAACACAGATGGATCACTGAAGTCTTTGCCAAGCAAACATGTGGACACTGGCATGGGCCTGGAGAGAATTGTGTCtgttattcaaaataaaagatcAAATTATGACACAGATCTTTTTCTTCCATTATTTGATGCTATCAGAGAGGGTACTGGAGCTCGACCATACACTGGTAAAGTTGGTGATGAAGATAAAGATAAAATAGATATGACCTACAGGGTAATTGCAGATCACATTAGAACATTGACAATAGCCATTGCTGATGGAGGAAGACCTGATAATACAGGACGTGGGTATGTATTGAGACGTATTCTTCGTAGAGCAGTTCGTTTTATGTCTGAAAAGTTACATGCACCACCTGGTTTTCTTGCCTCTCTCGtttatgttgttgttgatattttgGGTGAGGCATTTCCAGAAATCACCAAAAACCCACAACAGGCTGTAAACATAATCAATGAAGAAGaacaacaatttttgaaaactttggCTCGAGGAAGACGATTGTTCAACAGAACAGCTGATAAACACCAAGAGGATAAAGTCATTCCTGGTGATGTTGCATGGCGTTTATATGACACTTATGGTTTTCCTGTTGACTTGACTCAGTTAATGGCTGAAGAGCGAAATCTTTCAGTTGATCTTGAAGCTTATGAGGAAAGTAAACTTAAAGCTCAGGAAATTGCTCGTGGAAAAACATCAGCTGGAGAAGAAATGATTACCCTGGACATTCATTCAATAAatcatttacaaaatgttgttaAACTTCCACCAACAGAAGACTCCTTCAAATACAAGTATACATCAGACGGCGAAGGAAATTACAACTTTGAATCCTGCAGTGGAGAAGTGAAGGCCTTGTTGCTCAACAAGGAGTTTGTCTCTGAAGTTCCTGGGGGTGAGAAATGTGGTATTGTTTTGGATCAGACGGGTTTCTATGCTGAGGCTGGAGGTCAGATTTATGATCAAGGATACATGAGTAAAGTTGATGATGAAGAAGTTGAGTTTGCAGTCATGGATGTCCAGGTACATGGTGGATATGTGCTTCATGTAGGAGCACTGGAAGGAACACTCAAAGTTGGCGATAAAGTGAAATGCTTTATTGATGAGCCTCGCAGACGCCATAGCATGAACAACCACACAGCTACACACGTTCTCAACTTTGCTTTGAGGAAAGTTCTTGGCGAGGCAGATCAGAGAGGATCTTTGGTTGCCCCTGATAGATTGCGCTTTGACTTCACAGCAAagGGTGCAATGAACACAAAACAAATCAAGGAATGTGAGGAAATCTGTAAGAATATTGTGAACAAAAAGATGTCAGTATTTGCTTCAAATTCAAGTCTTGCAGCTGCGAAGGATATCCAAGGACTGAGAGCAATATTTGACGAAGTAACTGTCTTCCTTGTGGTtgcagttttgaatttttcaatcaTCCACATCTTGCTACTTGACCTAATCCCCACTTTTCCATCTTTTCTCTACAGGCATTTGCAAAATACAGGTCACATGAAAGAATTTTCTCTCATCTCGGAGGAGGCCATATCTAAAGGAATCCGAAGGATTGTTGCAATCACAGGCCCGGATGCTGAGAGGGCAATAAACCGTGCGCGTCTTCTTGATCAACACGTGGACAGTCTGAAGGCAAAAATTAGTGAGAAATTTACCTCGAAAACATTAAATCCTAAAGAAGCAATCCATGACATCACTGCATTGAGCGATGAAATTTCTGGTGCTATCATTCCTTACTGTGAAAAAGATAACATGAGAAATAAATTGAAGGAAGTGAAGAAAATTGTTGATGACGCAGACCGTGCGAGGAAGGCAGCTATGACCGAGGCTGTAAGTAGAGGAACTAACGAGCAAGACATTACAGAGGCTGGAGCAAATGCTAAGATTTTGGACAGTTGTTTACAACATGTGAAGAAAAGCTCTGCTCAAACAGCAGCGATGTTTTTCAGTGTGGATAAAGAACAGAAGAAGATCATCTGCATGTGTCAGGTTCCAAAGGAACTCATTGATCAGGGTTTGAAAGCTAATGAGTGGATTGGTTCTGTTTCGTCTTTGCTTGGTGGCAAGGGTGGGGGTAAAGAAATGTCTGCTCAAGCTTCGGGTCCGCATTATGAATGTCTCAAAGAGGCACAGCAGCTTGCAAAAGAATTCGCCAAACTTAAAGTAAGCAAGTGA

Transcript

ENSAPQT00000008031

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21894	Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori OX=7091 PE=1 SV=1
Q8BGQ7	Alanine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Aars1 PE=1 SV=1
Q8CFX8	Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus OX=10036 GN=Aars1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002669 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02272 all species →	DHHA1	DHHA1 domain	Family	Interproscan
PF01411 all species →	tRNA-synt_2c	tRNA synthetases class II (A)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018165 all species →	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR002318 all species →	Family	Alanine-tRNA ligase, class IIc	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR023033 all species →	Family	Alanine-tRNA ligase, eukaryota/bacteria	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR003156 all species →	Domain	DHHA1 domain	Interproscan
IPR050058 all species →	Family	Alanine--tRNA ligase	Interproscan
IPR018162 all species →	Homologous_superfamily	Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily	Interproscan
IPR018164 all species →	Domain	Alanyl-tRNA synthetase, class IIc, N-terminal	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11777 all species →	ALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004813 all species →	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006419 all species →	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000007197.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.